1 Messing around

Rawr!

devtools::load_all("errRt")

## Loading errRt

## Loading required package: dplyr

## 
## Attaching package: 'dplyr'

## The following object is masked from 'package:hpgltools':
## 
##     combine

## The following object is masked from 'package:Biobase':
## 
##     combine

## The following objects are masked from 'package:BiocGenerics':
## 
##     combine, intersect, setdiff, union

## The following objects are masked from 'package:stats':
## 
##     filter, lag

## The following objects are masked from 'package:base':
## 
##     intersect, setdiff, setequal, union

## Loading required package: tidyr

## Skipping missing files: quantify.r

## Adding files missing in collate: quant.R

data_summary <- create_matrices(sample_sheet="sample_sheets/all_samples.xlsx",
                                ident_column="identtable",
                                mut_column="mutationtable",
                                min_reads=3, min_indexes=NULL,
                                min_sequencer=10, min_position=24,
                                prune_n=TRUE, verbose=TRUE)

## Starting sample: 1.

## Reading the file containing mutations: preprocessing/s1/step4.txt.xz

## Reading the file containing the identical reads: preprocessing/s1/step2_identical_reads.txt.xz

## Removing any differences before position: 24.

## Before pruning, there are: 1156535 reads.

## After position pruning, there are: 1037310 reads.

## Removing any reads with 'N' as the hit.

## Before N pruning, there are: 1037310 reads.

## After N pruning, there are: 1033703 reads.

## Gathering information about the indexes observed, this is slow.

## Before read pruning, there are: 1742744 indexes.

## After read pruning, there are: 838158 indexes.

## Removing indexes with fewer than  indexes.

## Before index pruning, there are: 1033703 changed reads.

## Before index pruning, there are: 4681501 identical reads.

## After index pruning, there are: 532571 changed reads.

## After index pruning, there are: 3663814 identical reads.

## Gathering identical, mutant, and sequencer reads/indexes.

## Counting by direction.

## Counting by string.

## Counting by reference position.

## Counting by identity string.

## Counting by reference nucleotide.

## Counting by product nucleotide.

## Counting by mutation type.

## Counting by transitions/transversion.

## Counting strong/weak.

## Counting insertions by position.

## Counting insertions by nucleotide

## Counting deletions by position.

## Counting deletions by nucleotide.

## Starting sample: 2.

## Reading the file containing mutations: preprocessing/s2/step4.txt.xz

## Reading the file containing the identical reads: preprocessing/s2/step2_identical_reads.txt.xz

## Removing any differences before position: 24.

## Before pruning, there are: 3421203 reads.

## After position pruning, there are: 1758479 reads.

## Removing any reads with 'N' as the hit.

## Before N pruning, there are: 1758479 reads.

## After N pruning, there are: 1754936 reads.

## Gathering information about the indexes observed, this is slow.

## Before read pruning, there are: 1263564 indexes.

## After read pruning, there are: 694479 indexes.

## Removing indexes with fewer than  indexes.

## Before index pruning, there are: 1754936 changed reads.

## Before index pruning, there are: 5230976 identical reads.

## After index pruning, there are: 874781 changed reads.

## After index pruning, there are: 4834367 identical reads.

## Gathering identical, mutant, and sequencer reads/indexes.

## Counting by direction.

## Counting by string.

## Counting by reference position.

## Counting by identity string.

## Counting by reference nucleotide.

## Counting by product nucleotide.

## Counting by mutation type.

## Counting by transitions/transversion.

## Counting strong/weak.

## Counting insertions by position.

## Counting insertions by nucleotide

## Counting deletions by position.

## Counting deletions by nucleotide.

## Starting sample: 3.

## Reading the file containing mutations: preprocessing/s3/step4.txt.xz

## Reading the file containing the identical reads: preprocessing/s3/step2_identical_reads.txt.xz

## Removing any differences before position: 24.

## Before pruning, there are: 4309681 reads.

## After position pruning, there are: 1564155 reads.

## Removing any reads with 'N' as the hit.

## Before N pruning, there are: 1564155 reads.

## After N pruning, there are: 1561090 reads.

## Gathering information about the indexes observed, this is slow.

## Before read pruning, there are: 887983 indexes.

## After read pruning, there are: 465046 indexes.

## Removing indexes with fewer than  indexes.

## Before index pruning, there are: 1561090 changed reads.

## Before index pruning, there are: 3583390 identical reads.

## After index pruning, there are: 783358 changed reads.

## After index pruning, there are: 3332425 identical reads.

## Gathering identical, mutant, and sequencer reads/indexes.

## Counting by direction.

## Counting by string.

## Counting by reference position.

## Counting by identity string.

## Counting by reference nucleotide.

## Counting by product nucleotide.

## Counting by mutation type.

## Counting by transitions/transversion.

## Counting strong/weak.

## Counting insertions by position.

## Counting insertions by nucleotide

## Counting deletions by position.

## Counting deletions by nucleotide.

## Working on miss_reads_by_position.

## Working on miss_indexes_by_position.

## Working on miss_sequencer_by_position.

## Working on miss_reads_by_string.

## Warning in order(as.numeric(rownames(matrices[[t]]))): NAs introduced by
## coercion

## Working on miss_indexes_by_string.

## Warning in order(as.numeric(rownames(matrices[[t]]))): NAs introduced by
## coercion

## Working on miss_sequencer_by_string.

## Warning in order(as.numeric(rownames(matrices[[t]]))): NAs introduced by
## coercion

## Working on miss_reads_by_ref_nt.

## Working on miss_indexes_by_ref_nt.

## Working on miss_sequencer_by_ref_nt.

## Working on miss_reads_by_hit_nt.

## Working on miss_indexes_by_hit_nt.

## Working on miss_sequencer_by_hit_nt.

## Working on miss_reads_by_type.

## Working on miss_indexes_by_type.

## Working on miss_sequencer_by_type.

## Working on miss_reads_by_trans.

## Working on miss_indexes_by_trans.

## Working on miss_sequencer_by_trans.

## Working on miss_reads_by_strength.

## Working on miss_indexes_by_strength.

## Working on miss_sequencer_by_strength.

## Working on insert_reads_by_position.

## Working on insert_indexes_by_position.

## Working on insert_sequencer_by_position.

## Working on insert_reads_by_nt.

## Working on insert_indexes_by_nt.

## Working on insert_sequencer_by_nt.

## Working on delete_reads_by_position.

## Working on delete_indexes_by_position.

## Working on delete_sequencer_by_position.

## Working on delete_reads_by_nt.

## Working on delete_indexes_by_nt.

## Working on delete_sequencer_by_nt.

data_plots <- barplot_matrices(data_summary)
summary(data_summary)

##            Length Class  Mode
## matrices   33     -none- list
## normalized 33     -none- list

2 Print raw tables

for (t in 1:length(data_summary[["matrices"]])) {
  table_name <- names(data_summary[["matrices"]])[t]
  message("Raw table: ", table_name, ".")
  print(knitr::kable(data_summary[["matrices"]][t]))
}

## Raw table: miss_reads_by_position.

	s1	s2	s3
24	1082	6993	20760
25	1036	9849	12032
26	1450	16847	27910
27	449	4307	11001
28	540	6625	15943
29	1804	12471	17777
30	1454	7791	15889
31	91	1084	3718
32	130	598	1303
33	106	1089	5068
34	816	5685	18000
35	565	8596	25268
36	317	7577	18712
37	1137	6188	20871
38	1016	7734	20169
39	1240	14414	20347
40	375	3848	8694
41	867	4139	14017
42	1144	11326	13853
43	480	5381	10897
44	2066	10012	14480
45	534	6425	30319
46	471	12884	43257
47	838	7950	15358
48	1159	10205	17430
49	1561	15307	18633
50	924	12269	49995
51	597	10377	29519
52	65	6823	30202
53	115	8539	31644
54	2738	14398	28786
55	960	12290	24194
56	1486	6965	13036
57	2984	10992	13140
58	741	6337	10548
59	2875	13858	15395
60	3568	14729	15906
61	1305	9845	25326
62	1222	12216	13584
63	144	5728	11834
64	109	2524	4563
65	606	9498	29124
66	349	12052	46003
67	565	7549	13292
68	1645	7950	12268
69	193	2741	5180
70	199	3866	15935
71	506	7080	21765
72	54	395	2643
73	28	1312	2169
74	67	4837	12258
75	27	5786	22711
76	95	3785	6859
77	1187	7259	16358
78	2548	10363	14476
79	1153	7678	19627
80	700	4522	11538
81	72	842	3529
82	29	2135	4404
83	1890	8222	10287
84	1456	7466	24739
85	95	2096	7659
86	1963	10307	14331
87	1524	10530	29836
88	116	3203	7604
89	359	10556	24941
90	84	2818	13183
91	97	3913	5696
92	807	5349	10673
93	929	8464	16539
94	1509	10402	12369
95	1727	7188	9546
96	1409	8441	10633
97	81	2289	3302
98	64	1508	3568
99	66	820	996
100	1183	24788	35191
101	1375	8722	9267
102	1506	5108	12557
103	720	4350	6665
104	64	2005	5620
105	1906	9748	14336
106	1023	9900	22544
107	86	3649	4915
108	1115	7517	7824
109	1429	8310	11562
110	1879	9961	26921
111	2377	11193	10515
112	678	5301	10315
113	29	4049	15685
114	77	7376	30725
115	268	6009	11200
116	397	4652	15759
117	1251	9629	10311
118	1355	10146	24116
119	1144	9764	9008
120	90	3554	12334
121	157	7343	27886
122	318	5169	9742
123	143	5703	24255
124	744	6867	9647
125	2644	10318	11881
126	3097	11315	26036
127	1443	5851	9749
128	2041	10435	14825
129	2641	13580	14296
130	1354	12595	26333
131	546	5664	14987
132	751	7866	24809
133	1505	5746	12369
134	777	8649	6760
135	209	3516	11733
136	155	2108	5701
137	702	5897	11253
138	1776	7889	10150
139	855	8461	22531
140	641	4670	12971
141	1047	5860	10962
142	439	3068	6764
143	447	4741	9264
144	711	6078	14508
145	816	6578	10844
146	1562	6972	13615
147	69	1314	5387
148	117	3248	11606
149	695	8666	22301
150	154	3349	8572
151	1185	8855	9599
152	196	3986	8473
153	442	3872	8498
154	1090	7333	7978
155	1242	9895	20357
156	1701	10175	12956
157	1222	9816	25575
158	326	4632	11250
159	1326	7498	11609
160	948	7898	26104
161	848	4485	11133
162	853	4855	6857
163	992	9439	9100
164	62	2948	13002
165	55	5558	28535
166	354	5419	9080
167	1339	7420	9698
168	1500	9558	11342
169	1254	9134	19071
170	767	8798	10041
171	170	4624	13537
172	89	8446	36341
173	143	5078	7600
174	946	8412	10086
175	1482	11725	12442
176	2206	10204	21791
177	1713	11666	8792
178	895	8706	20714
179	177	1848	3268
180	75	788	4030
181	70	1310	7292
182	106	1075	2953
183	100	745	2781
184	50	902	4701
185	151	916	4652
186	96	964	6214
187	149	1225	3582
188	130	997	5698
189	117	1216	2763
190	80	1056	3028
191	108	969	3110
192	172	1284	3139
193	34	1177	2858
194	52	800	1806
195	183	2352	4592
196	62	1399	8101
197	77	618	1483
198	229	1426	5243
199	123	1647	4247

## Raw table: miss_indexes_by_position.

	s1	s2	s3
24	197	864	2071
25	219	1108	1298
26	309	1941	2931
27	108	589	1280
28	116	784	1747
29	336	1488	1871
30	311	969	1847
31	24	112	347
32	28	71	179
33	29	124	509
34	191	798	1993
35	128	1002	2706
36	70	969	2266
37	224	778	2286
38	170	887	2110
39	269	1693	2253
40	88	548	1038
41	178	505	1472
42	249	1293	1543
43	105	712	1351
44	346	1107	1549
45	121	784	3079
46	87	1405	4210
47	174	1038	1848
48	238	1209	1694
49	284	1667	1860
50	192	1469	5123
51	127	1263	3078
52	16	721	2996
53	25	917	3188
54	507	1525	2932
55	193	1502	2893
56	268	737	1314
57	598	1210	1359
58	165	965	1410
59	522	1465	1673
60	704	1542	1705
61	254	1133	2701
62	251	1335	1428
63	36	822	1563
64	24	293	498
65	143	1080	3086
66	72	1417	4693
67	118	832	1352
68	298	784	1226
69	32	322	566
70	36	481	1691
71	104	802	2307
72	14	58	280
73	7	134	234
74	14	470	1314
75	5	657	2271
76	19	410	724
77	215	816	1745
78	475	1130	1452
79	239	804	1914
80	131	503	1118
81	16	112	402
82	7	233	488
83	374	937	1121
84	236	835	2486
85	25	269	780
86	374	1190	1392
87	271	1179	2992
88	27	335	824
89	75	1210	2502
90	17	340	1434
91	19	409	621
92	163	588	1082
93	188	936	1598
94	297	1091	1243
95	308	859	1008
96	278	923	1201
97	16	241	356
98	16	197	379
99	14	98	143
100	233	2707	3684
101	289	999	1076
102	287	603	1396
103	149	532	766
104	17	222	571
105	364	1027	1422
106	191	1023	2388
107	22	387	546
108	225	839	812
109	274	906	1210
110	361	1192	2837
111	455	1207	1110
112	138	664	1243
113	8	495	1669
114	15	847	3191
115	63	728	1265
116	82	535	1634
117	253	1070	1106
118	263	1163	2484
119	232	1100	933
120	20	441	1299
121	29	835	2866
122	46	571	1008
123	33	608	2443
124	163	832	1038
125	512	1189	1280
126	535	1301	2682
127	285	661	1058
128	381	1160	1500
129	535	1397	1497
130	264	1406	2639
131	111	712	1726
132	144	804	2538
133	255	676	1291
134	142	1025	736
135	44	399	1246
136	35	264	672
137	131	661	1149
138	342	935	1128
139	157	916	2411
140	124	551	1302
141	202	655	1097
142	85	402	838
143	92	625	1147
144	156	682	1493
145	150	692	1153
146	265	779	1488
147	14	166	558
148	29	372	1232
149	132	1004	2281
150	29	348	978
151	238	1001	975
152	38	492	884
153	94	513	1059
154	227	814	829
155	271	1122	2149
156	333	1176	1374
157	224	1204	2532
158	60	559	1229
159	271	947	1354
160	199	972	2679
161	163	514	1148
162	163	618	824
163	178	1011	977
164	15	358	1331
165	12	651	2996
166	84	723	1093
167	278	898	1096
168	315	1098	1279
169	253	1019	2116
170	158	1044	1071
171	37	535	1521
172	19	966	3784
173	30	603	832
174	149	915	1052
175	310	1384	1314
176	402	1251	2439
177	328	1269	987
178	179	978	2253
179	37	255	435
180	14	119	433
181	13	158	806
182	20	147	348
183	18	115	343
184	11	117	557
185	30	135	548
186	21	125	662
187	29	163	430
188	23	130	634
189	21	170	371
190	17	137	358
191	21	135	379
192	35	195	425
193	7	145	352
194	9	117	235
195	37	293	563
196	14	169	843
197	14	79	197
198	48	216	662
199	28	178	473

## Raw table: miss_sequencer_by_position.

	s1	s2	s3
24	15	185	159
25	46	345	268
26	77	1027	977
27	218	2111	1843
28	31	490	349
29	63	526	424
30	46	2458	2086
31	11	155	115
32	9	114	108
33	37	244	195
34	281	1586	1340
35	73	769	640
36	131	3363	3047
37	294	1753	1518
38	26	776	617
39	165	2380	2126
40	278	2553	2079
41	22	354	250
42	46	1168	1017
43	299	2995	2501
44	51	760	649
45	420	2270	1834
46	30	478	395
47	313	3255	2816
48	61	576	485
49	29	515	407
50	96	492	447
51	64	1174	974
52	37	347	267
53	69	385	318
54	194	1292	1014
55	27	2680	2133
56	26	140	122
57	43	198	163
58	114	1937	1661
59	59	1326	1118
60	360	1510	1323
61	35	294	270
62	72	840	708
63	48	3055	2400
64	46	294	241
65	358	2214	1891
66	35	703	532
67	20	250	203
68	87	472	386
69	31	195	160
70	52	477	375
71	13	120	114
72	19	159	127
73	14	154	133
74	22	278	220
75	18	173	127
76	30	287	257
77	15	110	88
78	27	258	210
79	10	124	115
80	16	103	87
81	19	250	192
82	18	198	170
83	27	259	197
84	17	218	191
85	26	267	212
86	20	225	188
87	22	134	96
88	46	456	394
89	8	115	103
90	26	333	277
91	38	278	250
92	13	89	82
93	5	161	127
94	10	93	67
95	10	71	78
96	18	175	130
97	12	163	143
98	20	216	190
99	27	186	168
100	14	95	81
101	42	331	273
102	29	266	219
103	14	123	109
104	19	172	153
105	12	130	132
106	10	121	118
107	32	245	238
108	11	144	146
109	30	204	180
110	132	692	517
111	29	248	215
112	311	2710	2167
113	16	212	165
114	17	208	177
115	197	1803	1425
116	65	587	500
117	15	158	131
118	77	806	553
119	25	166	134
120	47	511	400
121	52	556	416
122	14	161	124
123	41	477	349
124	70	605	537
125	115	851	639
126	159	1686	836
127	55	671	487
128	119	901	711
129	22	374	319
130	116	1146	949
131	309	2801	2076
132	53	526	465
133	31	318	241
134	30	228	203
135	63	674	565
136	106	798	658
137	46	442	325
138	35	358	297
139	84	734	590
140	94	862	753
141	40	436	337
142	202	1774	1343
143	319	2883	2211
144	31	438	339
145	74	667	552
146	88	920	666
147	24	274	205
148	41	544	394
149	39	342	274
150	55	610	433
151	28	216	179
152	77	687	535
153	257	2320	1859
154	22	206	166
155	90	799	602
156	27	270	218
157	53	598	486
158	103	1143	851
159	75	606	400
160	54	613	470
161	50	592	420
162	118	1226	933
163	39	356	253
164	23	265	207
165	33	322	259
166	192	1959	1403
167	22	240	213
168	37	459	385
169	64	721	555
170	20	244	156
171	69	700	577
172	21	264	195
173	92	803	652
174	15	191	156
175	63	555	467
176	148	1521	1112
177	17	237	191
178	96	989	674
179	49	691	556
180	43	258	222
181	27	233	201
182	49	524	338
183	27	250	233
184	26	271	220
185	30	330	236
186	24	280	235
187	56	522	420
188	33	321	238
189	58	446	361
190	28	289	204
191	43	396	305
192	73	563	481
193	10	187	134
194	18	145	103
195	38	375	279
196	68	522	464
197	31	222	166
198	63	643	505
199	40	418	306

## Raw table: miss_reads_by_string.

	s1	s2	s3
024_mis_C_A	844	4619	6375
024_mis_C_G	0	789	2644
024_mis_C_T	238	1585	11741
025_mis_C_A	795	5897	6746
025_mis_C_G	36	767	1059
025_mis_C_T	205	3185	4227
026_mis_G_A	194	12577	21407
026_mis_G_C	72	1131	2304
026_mis_G_T	1184	3139	4199
027_mis_T_A	4	640	3405
027_mis_T_C	406	1764	4007
027_mis_T_G	39	1903	3589
028_mis_C_A	368	4659	4861
028_mis_C_G	14	242	874
028_mis_C_T	158	1724	10208
029_mis_G_A	133	10108	13500
029_mis_G_C	114	461	815
029_mis_G_T	1557	1902	3462
030_mis_T_A	11	52	569
030_mis_T_C	172	1569	4129
030_mis_T_G	1271	6170	11191
031_mis_T_A	4	509	1691
031_mis_T_C	33	469	1749
031_mis_T_G	54	106	278
032_mis_T_A	4	117	178
032_mis_T_C	107	412	1031
032_mis_T_G	19	69	94
033_mis_T_A	37	194	3092
033_mis_T_C	69	845	1692
033_mis_T_G	0	50	284
034_mis_A_C	319	1081	2062
034_mis_A_G	278	2890	12816
034_mis_A_T	219	1714	3122
035_mis_C_A	443	3561	4583
035_mis_C_G	0	0	626
035_mis_C_T	122	5035	20059
036_mis_A_C	196	4319	11284
036_mis_A_G	118	2900	6310
036_mis_A_T	3	358	1118
037_mis_A_C	639	2828	4752
037_mis_A_G	493	2984	15411
037_mis_A_T	5	376	708
038_mis_C_A	823	4629	7498
038_mis_C_G	31	162	975
038_mis_C_T	162	2943	11696
039_mis_G_A	241	9084	10211
039_mis_G_C	65	2696	5300
039_mis_G_T	934	2634	4836
040_mis_T_A	14	115	1347
040_mis_T_C	335	1593	3666
040_mis_T_G	26	2140	3681
041_mis_C_A	810	3052	7108
041_mis_C_G	18	104	1735
041_mis_C_T	39	983	5174
042_mis_G_A	263	8187	9118
042_mis_G_C	49	975	2797
042_mis_G_T	832	2164	1938
043_mis_T_A	19	676	2221
043_mis_T_C	53	1113	1744
043_mis_T_G	408	3592	6932
044_mis_G_A	78	5635	9360
044_mis_G_C	7	134	500
044_mis_G_T	1981	4243	4620
045_mis_A_C	489	2197	4826
045_mis_A_G	23	3600	24799
045_mis_A_T	22	628	694
046_mis_C_A	352	4982	4858
046_mis_C_G	8	1167	4391
046_mis_C_T	111	6735	34008
047_mis_T_A	66	2770	4201
047_mis_T_C	209	3804	8457
047_mis_T_G	563	1376	2700
048_mis_G_A	103	7512	14055
048_mis_G_C	0	40	65
048_mis_G_T	1056	2653	3310
049_mis_G_A	178	12468	13996
049_mis_G_C	78	385	436
049_mis_G_T	1305	2454	4201
050_mis_G_A	386	11336	48139
050_mis_G_C	47	306	318
050_mis_G_T	491	627	1538
051_mis_A_C	50	428	905
051_mis_A_G	526	9737	28312
051_mis_A_T	21	212	302
052_mis_A_C	45	287	1440
052_mis_A_G	20	6200	28247
052_mis_A_T	0	336	515
053_mis_A_C	86	586	2171
053_mis_A_G	18	7904	28356
053_mis_A_T	11	49	1117
054_mis_A_C	2723	7491	5829
054_mis_A_G	15	6895	22058
054_mis_A_T	0	12	899
055_mis_C_A	818	9541	12336
055_mis_C_G	0	881	974
055_mis_C_T	142	1868	10884
056_mis_C_A	1342	4453	7023
056_mis_C_G	105	347	986
056_mis_C_T	39	2165	5027
057_mis_C_A	1305	6854	7432
057_mis_C_G	0	256	1248
057_mis_C_T	1679	3882	4460
058_mis_T_A	19	1796	3215
058_mis_T_C	614	4085	6370
058_mis_T_G	108	456	963
059_mis_G_A	1200	9572	9206
059_mis_G_C	24	242	409
059_mis_G_T	1651	4044	5780
060_mis_G_A	15	7792	6143
060_mis_G_C	283	1374	2400
060_mis_G_T	3270	5563	7363
061_mis_C_A	1213	5880	5449
061_mis_C_G	54	973	3438
061_mis_C_T	38	2992	16439
062_mis_G_A	184	9013	8638
062_mis_G_C	7	732	1623
062_mis_G_T	1031	2471	3323
063_mis_T_A	3	435	1663
063_mis_T_C	33	666	2013
063_mis_T_G	108	4627	8158
064_mis_T_A	32	1424	1925
064_mis_T_C	71	1072	2347
064_mis_T_G	6	28	291
065_mis_A_C	452	1550	3671
065_mis_A_G	19	5397	19063
065_mis_A_T	135	2551	6390
066_mis_C_A	108	3177	4744
066_mis_C_G	0	717	2784
066_mis_C_T	241	8158	38475
067_mis_C_A	354	4335	5477
067_mis_C_G	0	347	508
067_mis_C_T	211	2867	7307
068_mis_C_A	1462	5875	7246
068_mis_C_G	0	469	1233
068_mis_C_T	183	1606	3789
069_mis_A_C	69	752	838
069_mis_A_G	124	1002	2561
069_mis_A_T	0	987	1781
070_mis_A_C	122	265	1055
070_mis_A_G	61	3315	14411
070_mis_A_T	16	286	469
071_mis_C_A	324	2347	3979
071_mis_C_G	0	826	1716
071_mis_C_T	182	3907	16070
072_mis_T_A	0	176	862
072_mis_T_C	28	170	1644
072_mis_T_G	26	49	137
073_mis_T_A	10	837	746
073_mis_T_C	18	399	1082
073_mis_T_G	0	76	341
074_mis_A_C	20	1065	741
074_mis_A_G	16	3322	9924
074_mis_A_T	31	450	1593
075_mis_A_C	18	451	1855
075_mis_A_G	6	4766	20197
075_mis_A_T	3	569	659
076_mis_T_A	58	2701	3229
076_mis_T_C	37	1005	3337
076_mis_T_G	0	79	293
077_mis_C_A	988	5817	8314
077_mis_C_G	6	316	857
077_mis_C_T	193	1126	7187
078_mis_G_A	72	6326	7553
078_mis_G_C	14	80	331
078_mis_G_T	2462	3957	6592
079_mis_C_A	1107	3922	3782
079_mis_C_G	0	471	2223
079_mis_C_T	46	3285	13622
080_mis_C_A	594	2402	3981
080_mis_C_G	14	34	312
080_mis_C_T	92	2086	7245
081_mis_T_A	27	388	1513
081_mis_T_C	45	327	1434
081_mis_T_G	0	127	582
082_mis_T_A	7	1242	2738
082_mis_T_C	14	789	1508
082_mis_T_G	8	104	158
083_mis_G_A	71	5568	5738
083_mis_G_C	32	99	171
083_mis_G_T	1787	2555	4378
084_mis_C_A	1291	2971	3858
084_mis_C_G	15	158	1142
084_mis_C_T	150	4337	19739
085_mis_A_C	0	169	1068
085_mis_A_G	95	1151	5445
085_mis_A_T	0	776	1146
086_mis_G_A	745	8161	10269
086_mis_G_C	45	150	499
086_mis_G_T	1173	1996	3563
087_mis_C_A	1450	6967	7805
087_mis_C_G	9	1610	3647
087_mis_C_T	65	1953	18384
088_mis_A_C	43	433	913
088_mis_A_G	40	2229	5477
088_mis_A_T	33	541	1214
089_mis_C_A	210	4129	6751
089_mis_C_G	0	947	1948
089_mis_C_T	149	5480	16242
090_mis_A_C	29	665	2005
090_mis_A_G	37	1962	9306
090_mis_A_T	18	191	1872
091_mis_T_A	15	3163	2945
091_mis_T_C	75	701	2596
091_mis_T_G	7	49	155
092_mis_C_A	655	3178	3470
092_mis_C_G	0	476	779
092_mis_C_T	152	1695	6424
093_mis_C_A	794	5827	10902
093_mis_C_G	25	1018	1073
093_mis_C_T	110	1619	4564
094_mis_C_A	1430	9140	6176
094_mis_C_G	9	200	916
094_mis_C_T	70	1062	5277
095_mis_C_A	1664	6189	6731
095_mis_C_G	0	297	775
095_mis_C_T	63	702	2040
096_mis_C_A	1270	6443	4804
096_mis_C_G	0	97	202
096_mis_C_T	139	1901	5627
097_mis_T_A	9	1051	2743
097_mis_T_C	72	928	334
097_mis_T_G	0	310	225
098_mis_T_A	20	1017	2080
098_mis_T_C	21	449	1352
098_mis_T_G	23	42	136
099_mis_T_A	3	117	261
099_mis_T_C	55	674	675
099_mis_T_G	8	29	60
100_mis_C_A	919	3809	3851
100_mis_C_G	13	22	99
100_mis_C_T	251	20957	31241
101_mis_G_A	168	5705	6245
101_mis_G_C	60	173	342
101_mis_G_T	1147	2844	2680
102_mis_C_A	1241	3005	2941
102_mis_C_G	13	130	131
102_mis_C_T	252	1973	9485
103_mis_C_A	567	2995	3048
103_mis_C_G	0	94	303
103_mis_C_T	153	1261	3314
104_mis_A_C	15	508	468
104_mis_A_G	34	885	3333
104_mis_A_T	15	612	1819
105_mis_G_A	65	5986	7998
105_mis_G_C	16	17	47
105_mis_G_T	1825	3745	6291
106_mis_C_A	809	6763	7193
106_mis_C_G	0	810	2377
106_mis_C_T	214	2327	12974
107_mis_T_A	11	2944	3039
107_mis_T_C	40	205	579
107_mis_T_G	35	500	1297
108_mis_G_A	77	5423	5184
108_mis_G_C	28	188	64
108_mis_G_T	1010	1906	2576
109_mis_G_A	67	4494	7114
109_mis_G_C	9	183	92
109_mis_G_T	1353	3633	4356
110_mis_C_A	1239	5200	5680
110_mis_C_G	204	977	1644
110_mis_C_T	436	3784	19597
111_mis_G_A	856	8486	7029
111_mis_G_C	8	187	222
111_mis_G_T	1513	2520	3264
112_mis_T_A	28	1169	2185
112_mis_T_C	247	1224	2135
112_mis_T_G	403	2908	5995
113_mis_A_C	0	110	1049
113_mis_A_G	26	3173	12954
113_mis_A_T	3	766	1682
114_mis_A_C	15	819	2264
114_mis_A_G	24	5885	26420
114_mis_A_T	38	672	2041
115_mis_T_A	89	3898	4177
115_mis_T_C	21	638	4186
115_mis_T_G	158	1473	2837
116_mis_A_C	71	811	1636
116_mis_A_G	279	3716	12085
116_mis_A_T	47	125	2038
117_mis_G_A	16	5299	6530
117_mis_G_C	26	199	299
117_mis_G_T	1209	4131	3482
118_mis_C_A	1168	6116	7357
118_mis_C_G	55	1346	3629
118_mis_C_T	132	2684	13130
119_mis_G_A	138	6781	6286
119_mis_G_C	6	345	227
119_mis_G_T	1000	2638	2495
120_mis_A_C	47	259	920
120_mis_A_G	32	3106	11174
120_mis_A_T	11	189	240
121_mis_A_C	91	669	1986
121_mis_A_G	66	6557	25083
121_mis_A_T	0	117	817
122_mis_G_A	236	4995	8681
122_mis_G_C	5	63	97
122_mis_G_T	77	111	964
123_mis_A_C	36	75	715
123_mis_A_G	104	5533	23422
123_mis_A_T	3	95	118
124_mis_G_A	37	5091	6678
124_mis_G_C	0	38	58
124_mis_G_T	707	1738	2911
125_mis_G_A	165	6239	5568
125_mis_G_C	9	105	154
125_mis_G_T	2470	3974	6159
126_mis_C_A	2554	5323	6184
126_mis_C_G	80	2861	6309
126_mis_C_T	463	3131	13543
127_mis_C_A	1069	4244	5497
127_mis_C_G	52	724	1111
127_mis_C_T	322	883	3141
128_mis_C_A	1534	8168	8694
128_mis_C_G	155	933	2217
128_mis_C_T	352	1334	3914
129_mis_G_A	1076	10259	9520
129_mis_G_C	35	216	304
129_mis_G_T	1530	3105	4472
130_mis_C_A	1246	8553	10968
130_mis_C_G	77	898	3807
130_mis_C_T	31	3144	11558
131_mis_A_C	294	2773	5868
131_mis_A_G	181	2600	7639
131_mis_A_T	71	291	1480
132_mis_C_A	602	2070	4854
132_mis_C_G	8	836	3178
132_mis_C_T	141	4960	16777
133_mis_C_A	1285	4016	5885
133_mis_C_G	34	213	1080
133_mis_C_T	186	1517	5404
134_mis_G_A	232	7298	5459
134_mis_G_C	17	90	249
134_mis_G_T	528	1261	1052
135_mis_A_C	98	448	1605
135_mis_A_G	92	2425	9670
135_mis_A_T	19	643	458
136_mis_T_A	20	844	2718
136_mis_T_C	66	767	2075
136_mis_T_G	69	497	908
137_mis_C_A	562	4267	4514
137_mis_C_G	52	403	1100
137_mis_C_T	88	1227	5639
138_mis_G_A	175	4178	5999
138_mis_G_C	23	285	628
138_mis_G_T	1578	3426	3523
139_mis_C_A	747	3735	4815
139_mis_C_G	36	768	2654
139_mis_C_T	72	3958	15062
140_mis_C_A	429	2557	6306
140_mis_C_G	113	680	1676
140_mis_C_T	99	1433	4989
141_mis_C_A	918	3981	5040
141_mis_C_G	26	451	338
141_mis_C_T	103	1428	5584
142_mis_T_A	73	284	1836
142_mis_T_C	72	976	1778
142_mis_T_G	294	1808	3150
143_mis_T_A	51	1481	2330
143_mis_T_C	58	372	1234
143_mis_T_G	338	2888	5700
144_mis_C_A	596	4314	4740
144_mis_C_G	31	381	1224
144_mis_C_T	84	1383	8544
145_mis_C_A	761	4723	4399
145_mis_C_G	42	251	653
145_mis_C_T	13	1604	5792
146_mis_C_A	1464	6217	9756
146_mis_C_G	3	63	584
146_mis_C_T	95	692	3275
147_mis_A_C	27	134	365
147_mis_A_G	42	1050	3422
147_mis_A_T	0	130	1600
148_mis_A_C	38	348	710
148_mis_A_G	52	2648	10363
148_mis_A_T	27	252	533
149_mis_C_A	482	4273	6331
149_mis_C_G	36	146	459
149_mis_C_T	177	4247	15511
150_mis_A_C	74	425	1815
150_mis_A_G	55	2361	5818
150_mis_A_T	25	563	939
151_mis_G_A	47	6380	6400
151_mis_G_C	3	59	47
151_mis_G_T	1135	2416	3152
152_mis_T_A	31	2650	4114
152_mis_T_C	60	598	1935
152_mis_T_G	105	738	2424
153_mis_T_A	9	1130	2255
153_mis_T_C	131	398	1300
153_mis_T_G	302	2344	4943
154_mis_G_A	95	5380	5849
154_mis_G_C	8	59	179
154_mis_G_T	987	1894	1950
155_mis_C_A	829	4512	6460
155_mis_C_G	55	1300	3262
155_mis_C_T	358	4083	10635
156_mis_G_A	396	7963	8220
156_mis_G_C	9	170	325
156_mis_G_T	1296	2042	4411
157_mis_C_A	1113	7182	7622
157_mis_C_G	24	1219	4389
157_mis_C_T	85	1415	13564
158_mis_A_C	57	527	1690
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158_mis_A_T	73	946	2058
159_mis_G_A	25	5100	6049
159_mis_G_C	4	80	190
159_mis_G_T	1297	2318	5370
160_mis_C_A	753	4315	7025
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160_mis_C_T	127	2789	15743
161_mis_C_A	775	2659	5423
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163_mis_G_A	77	6319	6139
163_mis_G_C	0	95	268
163_mis_G_T	915	3025	2693
164_mis_A_C	0	146	1085
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164_mis_A_T	32	166	652
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167_mis_G_A	162	5258	7241
167_mis_G_C	0	72	215
167_mis_G_T	1177	2090	2242
168_mis_G_A	175	6834	7903
168_mis_G_C	9	36	272
168_mis_G_T	1316	2688	3167
169_mis_C_A	961	5691	5406
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169_mis_C_T	231	2694	12334
170_mis_G_A	101	6942	7644
170_mis_G_C	79	54	214
170_mis_G_T	587	1802	2183
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171_mis_A_T	25	286	593
172_mis_A_C	11	325	3007
172_mis_A_G	54	7837	32160
172_mis_A_T	24	284	1174
173_mis_T_A	56	3267	2393
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173_mis_T_G	84	761	1936
174_mis_G_A	51	6664	7746
174_mis_G_C	0	73	217
174_mis_G_T	895	1675	2123
175_mis_G_A	139	6873	8064
175_mis_G_C	20	61	70
175_mis_G_T	1323	4791	4308
176_mis_C_A	1486	6364	7314
176_mis_C_G	84	974	3675
176_mis_C_T	636	2866	10802
177_mis_G_A	206	7911	5698
177_mis_G_C	15	410	84
177_mis_G_T	1492	3345	3010
178_mis_C_A	846	3628	5333
178_mis_C_G	26	323	1647
178_mis_C_T	23	4755	13734
179_mis_T_A	46	329	962
179_mis_T_C	30	453	554
179_mis_T_G	101	1066	1752
180_mis_A_C	29	225	1191
180_mis_A_G	28	418	2154
180_mis_A_T	18	145	685
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181_mis_A_G	7	764	5882
181_mis_A_T	8	157	608
182_mis_T_A	38	291	770
182_mis_T_C	8	344	1296
182_mis_T_G	60	440	887
183_mis_A_C	57	246	938
183_mis_A_G	33	429	1513
183_mis_A_T	10	70	330
184_mis_A_C	15	459	1125
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184_mis_A_T	19	121	247
185_mis_G_A	53	431	3138
185_mis_G_C	19	97	94
185_mis_G_T	79	388	1420
186_mis_A_C	35	200	937
186_mis_A_G	33	578	4578
186_mis_A_T	28	186	699
187_mis_T_A	36	462	1210
187_mis_T_C	25	281	1396
187_mis_T_G	88	482	976
188_mis_A_C	73	369	946
188_mis_A_G	26	495	4088
188_mis_A_T	31	133	664
189_mis_T_A	37	360	1256
189_mis_T_C	20	255	650
189_mis_T_G	60	601	857
190_mis_C_A	52	911	2005
190_mis_C_G	0	49	200
190_mis_C_T	28	96	823
191_mis_A_C	39	458	937
191_mis_A_G	52	228	1698
191_mis_A_T	17	283	475
192_mis_T_A	23	279	817
192_mis_T_C	33	452	935
192_mis_T_G	116	553	1387
193_mis_C_A	30	713	1020
193_mis_C_G	4	110	177
193_mis_C_T	0	354	1661
194_mis_G_A	21	525	1341
194_mis_G_C	13	88	161
194_mis_G_T	18	187	304
195_mis_G_A	58	1385	2343
195_mis_G_C	31	200	215
195_mis_G_T	94	767	2034
196_mis_C_A	6	429	1413
196_mis_C_G	34	296	1165
196_mis_C_T	22	674	5523
197_mis_T_A	18	75	552
197_mis_T_C	14	144	335
197_mis_T_G	45	399	596
198_mis_T_A	14	197	838
198_mis_T_C	42	222	1412
198_mis_T_G	173	1007	2993
199_mis_T_A	5	637	1415
199_mis_T_C	53	622	1719
199_mis_T_G	65	388	1113

## Raw table: miss_indexes_by_string.

	s1	s2	s3
024_mis_C_A	157	563	620
024_mis_C_G	0	105	292
024_mis_C_T	40	196	1159
025_mis_C_A	166	675	680
025_mis_C_G	8	104	123
025_mis_C_T	45	329	495
026_mis_G_A	40	1415	2165
026_mis_G_C	22	173	352
026_mis_G_T	247	353	414
027_mis_T_A	1	93	321
027_mis_T_C	98	231	463
027_mis_T_G	9	265	496
028_mis_C_A	70	533	548
028_mis_C_G	3	33	105
028_mis_C_T	43	218	1094
029_mis_G_A	22	1180	1363
029_mis_G_C	24	63	106
029_mis_G_T	290	245	402
030_mis_T_A	3	9	65
030_mis_T_C	32	179	381
030_mis_T_G	276	781	1401
031_mis_T_A	1	34	125
031_mis_T_C	9	64	187
031_mis_T_G	14	14	35
032_mis_T_A	1	18	20
032_mis_T_C	22	43	148
032_mis_T_G	5	10	11
033_mis_T_A	10	26	290
033_mis_T_C	19	91	192
033_mis_T_G	0	7	27
034_mis_A_C	66	133	232
034_mis_A_G	62	338	1330
034_mis_A_T	63	327	431
035_mis_C_A	100	427	537
035_mis_C_G	0	0	70
035_mis_C_T	28	575	2099
036_mis_A_C	42	611	1510
036_mis_A_G	27	313	638
036_mis_A_T	1	45	118
037_mis_A_C	125	336	554
037_mis_A_G	98	400	1658
037_mis_A_T	1	42	74
038_mis_C_A	130	515	794
038_mis_C_G	7	22	84
038_mis_C_T	33	350	1232
039_mis_G_A	50	983	1011
039_mis_G_C	21	389	745
039_mis_G_T	198	321	497
040_mis_T_A	3	21	143
040_mis_T_C	79	219	398
040_mis_T_G	6	308	497
041_mis_C_A	165	376	735
041_mis_C_G	4	12	166
041_mis_C_T	9	117	571
042_mis_G_A	45	884	913
042_mis_G_C	11	149	385
042_mis_G_T	193	260	245
043_mis_T_A	4	70	214
043_mis_T_C	11	128	212
043_mis_T_G	90	514	925
044_mis_G_A	18	663	986
044_mis_G_C	1	15	46
044_mis_G_T	327	429	517
045_mis_A_C	108	267	537
045_mis_A_G	7	452	2471
045_mis_A_T	6	65	71
046_mis_C_A	61	567	583
046_mis_C_G	2	133	379
046_mis_C_T	24	705	3248
047_mis_T_A	12	315	399
047_mis_T_C	46	551	1140
047_mis_T_G	116	172	309
048_mis_G_A	24	860	1282
048_mis_G_C	0	8	9
048_mis_G_T	214	341	403
049_mis_G_A	30	1342	1381
049_mis_G_C	16	41	47
049_mis_G_T	238	284	432
050_mis_G_A	73	1341	4895
050_mis_G_C	8	35	39
050_mis_G_T	111	93	189
051_mis_A_C	10	55	107
051_mis_A_G	112	1182	2927
051_mis_A_T	5	26	44
052_mis_A_C	11	46	147
052_mis_A_G	5	646	2794
052_mis_A_T	0	29	55
053_mis_A_C	19	68	239
053_mis_A_G	5	839	2824
053_mis_A_T	1	10	125
054_mis_A_C	503	809	688
054_mis_A_G	4	714	2159
054_mis_A_T	0	2	85
055_mis_C_A	162	1199	1611
055_mis_C_G	0	84	108
055_mis_C_T	31	219	1174
056_mis_C_A	245	502	681
056_mis_C_G	14	33	102
056_mis_C_T	9	202	531
057_mis_C_A	273	747	806
057_mis_C_G	0	25	92
057_mis_C_T	325	438	461
058_mis_T_A	6	211	308
058_mis_T_C	136	695	990
058_mis_T_G	23	59	112
059_mis_G_A	219	954	947
059_mis_G_C	7	40	53
059_mis_G_T	296	471	673
060_mis_G_A	5	772	658
060_mis_G_C	62	175	281
060_mis_G_T	637	595	766
061_mis_C_A	231	658	634
061_mis_C_G	14	139	367
061_mis_C_T	9	336	1700
062_mis_G_A	40	940	845
062_mis_G_C	2	104	213
062_mis_G_T	209	291	370
063_mis_T_A	1	38	156
063_mis_T_C	9	86	235
063_mis_T_G	26	698	1172
064_mis_T_A	8	176	222
064_mis_T_C	15	114	243
064_mis_T_G	1	3	33
065_mis_A_C	103	218	431
065_mis_A_G	4	511	1911
065_mis_A_T	36	351	744
066_mis_C_A	27	398	555
066_mis_C_G	0	72	286
066_mis_C_T	45	947	3852
067_mis_C_A	69	462	552
067_mis_C_G	0	47	54
067_mis_C_T	49	323	746
068_mis_C_A	255	598	749
068_mis_C_G	0	42	119
068_mis_C_T	43	144	358
069_mis_A_C	12	84	94
069_mis_A_G	20	129	299
069_mis_A_T	0	109	173
070_mis_A_C	19	34	127
070_mis_A_G	14	407	1492
070_mis_A_T	3	40	72
071_mis_C_A	76	278	424
071_mis_C_G	0	79	202
071_mis_C_T	28	445	1681
072_mis_T_A	0	19	92
072_mis_T_C	6	31	168
072_mis_T_G	8	8	20
073_mis_T_A	2	80	84
073_mis_T_C	5	44	112
073_mis_T_G	0	10	38
074_mis_A_C	3	96	87
074_mis_A_G	4	323	1050
074_mis_A_T	7	51	177
075_mis_A_C	2	62	184
075_mis_A_G	2	533	2019
075_mis_A_T	1	62	68
076_mis_T_A	12	285	320
076_mis_T_C	7	112	364
076_mis_T_G	0	13	40
077_mis_C_A	174	618	858
077_mis_C_G	2	40	103
077_mis_C_T	39	158	784
078_mis_G_A	17	684	775
078_mis_G_C	4	13	46
078_mis_G_T	454	433	631
079_mis_C_A	227	426	396
079_mis_C_G	0	58	244
079_mis_C_T	12	320	1274
080_mis_C_A	108	271	375
080_mis_C_G	4	4	29
080_mis_C_T	19	228	714
081_mis_T_A	5	55	191
081_mis_T_C	11	40	151
081_mis_T_G	0	17	60
082_mis_T_A	2	132	301
082_mis_T_C	4	88	166
082_mis_T_G	1	13	21
083_mis_G_A	15	620	649
083_mis_G_C	9	16	23
083_mis_G_T	350	301	449
084_mis_C_A	200	304	403
084_mis_C_G	2	27	102
084_mis_C_T	34	504	1981
085_mis_A_C	0	28	102
085_mis_A_G	25	158	576
085_mis_A_T	0	83	102
086_mis_G_A	120	893	975
086_mis_G_C	12	22	59
086_mis_G_T	242	275	358
087_mis_C_A	252	773	826
087_mis_C_G	3	180	385
087_mis_C_T	16	226	1781
088_mis_A_C	9	63	118
088_mis_A_G	11	227	581
088_mis_A_T	7	45	125
089_mis_C_A	43	486	656
089_mis_C_G	0	109	171
089_mis_C_T	32	615	1675
090_mis_A_C	5	81	240
090_mis_A_G	8	233	997
090_mis_A_T	4	26	197
091_mis_T_A	2	312	315
091_mis_T_C	16	90	286
091_mis_T_G	1	7	20
092_mis_C_A	132	335	360
092_mis_C_G	0	59	83
092_mis_C_T	31	194	639
093_mis_C_A	161	654	1074
093_mis_C_G	7	111	118
093_mis_C_T	20	171	406
094_mis_C_A	280	944	631
094_mis_C_G	3	30	115
094_mis_C_T	14	117	497
095_mis_C_A	294	736	673
095_mis_C_G	0	35	97
095_mis_C_T	14	88	238
096_mis_C_A	248	677	558
096_mis_C_G	0	17	40
096_mis_C_T	30	229	603
097_mis_T_A	2	122	286
097_mis_T_C	14	86	44
097_mis_T_G	0	33	26
098_mis_T_A	6	125	220
098_mis_T_C	5	66	139
098_mis_T_G	5	6	20
099_mis_T_A	1	15	33
099_mis_T_C	12	78	98
099_mis_T_G	1	5	12
100_mis_C_A	179	455	428
100_mis_C_G	3	5	11
100_mis_C_T	51	2247	3245
101_mis_G_A	40	642	708
101_mis_G_C	16	24	44
101_mis_G_T	233	333	324
102_mis_C_A	235	334	315
102_mis_C_G	1	12	22
102_mis_C_T	51	257	1059
103_mis_C_A	113	360	309
103_mis_C_G	0	14	38
103_mis_C_T	36	158	419
104_mis_A_C	4	52	51
104_mis_A_G	8	96	350
104_mis_A_T	5	74	170
105_mis_G_A	17	615	829
105_mis_G_C	4	1	6
105_mis_G_T	343	411	587
106_mis_C_A	149	671	738
106_mis_C_G	0	65	241
106_mis_C_T	42	287	1409
107_mis_T_A	2	291	323
107_mis_T_C	11	32	82
107_mis_T_G	9	64	141
108_mis_G_A	15	572	540
108_mis_G_C	6	22	10
108_mis_G_T	204	245	262
109_mis_G_A	13	467	731
109_mis_G_C	2	20	14
109_mis_G_T	259	419	465
110_mis_C_A	223	655	635
110_mis_C_G	41	98	200
110_mis_C_T	97	439	2002
111_mis_G_A	147	878	731
111_mis_G_C	2	19	25
111_mis_G_T	306	310	354
112_mis_T_A	7	137	252
112_mis_T_C	49	116	218
112_mis_T_G	82	411	773
113_mis_A_C	0	17	108
113_mis_A_G	7	403	1384
113_mis_A_T	1	75	177
114_mis_A_C	3	79	270
114_mis_A_G	6	685	2710
114_mis_A_T	6	83	211
115_mis_T_A	20	447	478
115_mis_T_C	6	94	411
115_mis_T_G	37	187	376
116_mis_A_C	17	97	207
116_mis_A_G	57	421	1257
116_mis_A_T	8	17	170
117_mis_G_A	4	626	677
117_mis_G_C	4	25	28
117_mis_G_T	245	419	401
118_mis_C_A	224	691	715
118_mis_C_G	11	161	398
118_mis_C_T	28	311	1371
119_mis_G_A	27	750	636
119_mis_G_C	2	36	31
119_mis_G_T	203	314	266
120_mis_A_C	10	38	118
120_mis_A_G	7	380	1143
120_mis_A_T	3	23	38
121_mis_A_C	14	68	171
121_mis_A_G	15	749	2607
121_mis_A_T	0	18	88
122_mis_G_A	33	544	882
122_mis_G_C	1	9	14
122_mis_G_T	12	18	112
123_mis_A_C	6	10	82
123_mis_A_G	26	582	2340
123_mis_A_T	1	16	21
124_mis_G_A	11	609	678
124_mis_G_C	0	7	10
124_mis_G_T	152	216	350
125_mis_G_A	37	675	589
125_mis_G_C	3	17	21
125_mis_G_T	472	497	670
126_mis_C_A	433	605	677
126_mis_C_G	17	327	669
126_mis_C_T	85	369	1336
127_mis_C_A	213	473	585
127_mis_C_G	12	75	131
127_mis_C_T	60	113	342
128_mis_C_A	295	872	850
128_mis_C_G	28	121	287
128_mis_C_T	58	167	363
129_mis_G_A	215	1024	1010
129_mis_G_C	9	27	42
129_mis_G_T	311	346	445
130_mis_C_A	240	938	1050
130_mis_C_G	15	118	403
130_mis_C_T	9	350	1186
131_mis_A_C	65	377	757
131_mis_A_G	34	301	822
131_mis_A_T	12	34	147
132_mis_C_A	109	228	513
132_mis_C_G	2	102	321
132_mis_C_T	33	474	1704
133_mis_C_A	200	467	589
133_mis_C_G	8	26	136
133_mis_C_T	47	183	566
134_mis_G_A	40	864	584
134_mis_G_C	3	12	33
134_mis_G_T	99	149	119
135_mis_A_C	20	62	181
135_mis_A_G	19	258	1005
135_mis_A_T	5	79	60
136_mis_T_A	4	100	302
136_mis_T_C	16	98	251
136_mis_T_G	15	66	119
137_mis_C_A	101	478	487
137_mis_C_G	11	46	134
137_mis_C_T	19	137	528
138_mis_G_A	36	494	671
138_mis_G_C	5	39	72
138_mis_G_T	301	402	385
139_mis_C_A	134	393	563
139_mis_C_G	7	97	293
139_mis_C_T	16	426	1555
140_mis_C_A	75	294	602
140_mis_C_G	22	70	168
140_mis_C_T	27	187	532
141_mis_C_A	173	433	509
141_mis_C_G	5	41	41
141_mis_C_T	24	181	547
142_mis_T_A	13	43	219
142_mis_T_C	14	116	208
142_mis_T_G	58	243	411
143_mis_T_A	9	180	254
143_mis_T_C	15	54	162
143_mis_T_G	68	391	731
144_mis_C_A	129	467	486
144_mis_C_G	6	41	139
144_mis_C_T	21	174	868
145_mis_C_A	137	488	539
145_mis_C_G	9	37	66
145_mis_C_T	4	167	548
146_mis_C_A	240	688	1100
146_mis_C_G	1	9	51
146_mis_C_T	24	82	337
147_mis_A_C	5	19	49
147_mis_A_G	9	125	368
147_mis_A_T	0	22	141
148_mis_A_C	8	45	90
148_mis_A_G	15	299	1073
148_mis_A_T	6	28	69
149_mis_C_A	102	508	669
149_mis_C_G	7	24	66
149_mis_C_T	23	472	1546
150_mis_A_C	14	55	224
150_mis_A_G	10	239	655
150_mis_A_T	5	54	99
151_mis_G_A	8	733	659
151_mis_G_C	1	8	7
151_mis_G_T	229	260	309
152_mis_T_A	7	303	407
152_mis_T_C	11	85	202
152_mis_T_G	20	104	275
153_mis_T_A	3	132	244
153_mis_T_C	28	49	167
153_mis_T_G	63	332	648
154_mis_G_A	18	590	573
154_mis_G_C	2	8	23
154_mis_G_T	207	216	233
155_mis_C_A	172	499	653
155_mis_C_G	13	155	349
155_mis_C_T	86	468	1147
156_mis_G_A	71	869	897
156_mis_G_C	2	20	45
156_mis_G_T	260	287	432
157_mis_C_A	199	850	799
157_mis_C_G	4	155	457
157_mis_C_T	21	199	1276
158_mis_A_C	11	72	177
158_mis_A_G	36	383	844
158_mis_A_T	13	104	208
159_mis_G_A	7	625	715
159_mis_G_C	1	12	28
159_mis_G_T	263	310	611
160_mis_C_A	153	538	647
160_mis_C_G	12	106	354
160_mis_C_T	34	328	1678
161_mis_C_A	143	322	555
161_mis_C_G	2	13	60
161_mis_C_T	18	179	533
162_mis_T_A	19	242	318
162_mis_T_C	92	192	215
162_mis_T_G	52	184	291
163_mis_G_A	14	691	671
163_mis_G_C	0	11	29
163_mis_G_T	164	309	277
164_mis_A_C	0	17	116
164_mis_A_G	8	322	1129
164_mis_A_T	7	19	86
165_mis_A_C	1	37	131
165_mis_A_G	10	564	2803
165_mis_A_T	1	50	62
166_mis_T_A	14	374	391
166_mis_T_C	13	97	213
166_mis_T_G	57	252	489
167_mis_G_A	37	621	825
167_mis_G_C	0	10	23
167_mis_G_T	241	267	248
168_mis_G_A	49	772	895
168_mis_G_C	3	4	33
168_mis_G_T	263	322	351
169_mis_C_A	192	622	639
169_mis_C_G	14	96	174
169_mis_C_T	47	301	1303
170_mis_G_A	21	825	793
170_mis_G_C	15	7	26
170_mis_G_T	122	212	252
171_mis_A_C	23	103	206
171_mis_A_G	8	400	1242
171_mis_A_T	6	32	73
172_mis_A_C	2	47	280
172_mis_A_G	10	882	3383
172_mis_A_T	7	37	121
173_mis_T_A	13	372	283
173_mis_T_C	1	114	298
173_mis_T_G	16	117	251
174_mis_G_A	11	702	788
174_mis_G_C	0	8	29
174_mis_G_T	138	205	235
175_mis_G_A	31	792	813
175_mis_G_C	4	8	11
175_mis_G_T	275	584	490
176_mis_C_A	250	767	780
176_mis_C_G	18	119	397
176_mis_C_T	134	365	1262
177_mis_G_A	41	853	638
177_mis_G_C	5	37	12
177_mis_G_T	282	379	337
178_mis_C_A	169	414	592
178_mis_C_G	5	54	198
178_mis_C_T	5	510	1463
179_mis_T_A	10	50	121
179_mis_T_C	8	71	86
179_mis_T_G	19	134	228
180_mis_A_C	6	39	122
180_mis_A_G	5	55	241
180_mis_A_T	3	25	70
181_mis_A_C	11	49	107
181_mis_A_G	1	81	622
181_mis_A_T	1	28	77
182_mis_T_A	8	43	94
182_mis_T_C	2	42	134
182_mis_T_G	10	62	120
183_mis_A_C	9	37	108
183_mis_A_G	7	68	195
183_mis_A_T	2	10	40
184_mis_A_C	3	55	126
184_mis_A_G	4	47	390
184_mis_A_T	4	15	41
185_mis_G_A	10	70	364
185_mis_G_C	3	13	13
185_mis_G_T	17	52	171
186_mis_A_C	8	31	104
186_mis_A_G	7	66	484
186_mis_A_T	6	28	74
187_mis_T_A	7	64	160
187_mis_T_C	4	32	138
187_mis_T_G	18	67	132
188_mis_A_C	14	53	113
188_mis_A_G	4	56	436
188_mis_A_T	5	21	85
189_mis_T_A	7	52	164
189_mis_T_C	4	38	92
189_mis_T_G	10	80	115
190_mis_C_A	11	116	224
190_mis_C_G	0	9	27
190_mis_C_T	6	12	107
191_mis_A_C	8	66	123
191_mis_A_G	10	29	192
191_mis_A_T	3	40	64
192_mis_T_A	5	46	114
192_mis_T_C	8	64	127
192_mis_T_G	22	85	184
193_mis_C_A	6	88	136
193_mis_C_G	1	14	22
193_mis_C_T	0	43	194
194_mis_G_A	4	75	164
194_mis_G_C	2	12	24
194_mis_G_T	3	30	47
195_mis_G_A	10	177	319
195_mis_G_C	7	25	30
195_mis_G_T	20	91	214
196_mis_C_A	2	50	148
196_mis_C_G	7	38	149
196_mis_C_T	5	81	546
197_mis_T_A	3	8	61
197_mis_T_C	2	22	52
197_mis_T_G	9	49	84
198_mis_T_A	4	27	97
198_mis_T_C	8	36	162
198_mis_T_G	36	153	403
199_mis_T_A	1	52	145
199_mis_T_C	11	78	186
199_mis_T_G	16	48	142

## Raw table: miss_sequencer_by_string.

	s1	s2	s3
024_mis_C_A	5	50	43
024_mis_C_G	1	52	44
024_mis_C_T	9	83	72
025_mis_C_A	14	77	59
025_mis_C_G	16	131	87
025_mis_C_T	16	137	122
026_mis_G_A	9	142	129
026_mis_G_C	11	551	611
026_mis_G_T	57	334	237
027_mis_T_A	4	75	67
027_mis_T_C	209	876	811
027_mis_T_G	5	1160	965
028_mis_C_A	3	36	57
028_mis_C_G	19	146	100
028_mis_C_T	9	308	192
029_mis_G_A	7	74	66
029_mis_G_C	4	187	156
029_mis_G_T	52	265	202
030_mis_T_A	4	25	18
030_mis_T_C	14	155	123
030_mis_T_G	28	2278	1945
031_mis_T_A	1	20	13
031_mis_T_C	8	99	73
031_mis_T_G	2	36	29
032_mis_T_A	0	19	18
032_mis_T_C	4	70	65
032_mis_T_G	5	25	25
033_mis_T_A	26	107	85
033_mis_T_C	9	120	82
033_mis_T_G	2	17	28
034_mis_A_C	259	1046	909
034_mis_A_G	6	100	77
034_mis_A_T	16	440	354
035_mis_C_A	65	694	556
035_mis_C_G	0	7	14
035_mis_C_T	8	68	70
036_mis_A_C	112	3225	2938
036_mis_A_G	16	114	92
036_mis_A_T	3	24	17
037_mis_A_C	282	1644	1433
037_mis_A_G	10	84	63
037_mis_A_T	2	25	22
038_mis_C_A	4	656	502
038_mis_C_G	10	53	52
038_mis_C_T	12	67	63
039_mis_G_A	18	134	111
039_mis_G_C	13	1574	1477
039_mis_G_T	134	672	538
040_mis_T_A	2	64	51
040_mis_T_C	265	1206	983
040_mis_T_G	11	1283	1045
041_mis_C_A	5	54	42
041_mis_C_G	4	66	54
041_mis_C_T	13	234	154
042_mis_G_A	8	117	87
042_mis_G_C	8	804	709
042_mis_G_T	30	247	221
043_mis_T_A	14	85	99
043_mis_T_C	29	229	175
043_mis_T_G	256	2681	2227
044_mis_G_A	33	225	183
044_mis_G_C	6	38	31
044_mis_G_T	12	497	435
045_mis_A_C	399	1920	1532
045_mis_A_G	13	260	229
045_mis_A_T	8	90	73
046_mis_C_A	4	364	296
046_mis_C_G	1	11	17
046_mis_C_T	25	103	82
047_mis_T_A	3	46	37
047_mis_T_C	36	2279	1925
047_mis_T_G	274	930	854
048_mis_G_A	8	107	74
048_mis_G_C	4	30	22
048_mis_G_T	49	439	389
049_mis_G_A	8	128	95
049_mis_G_C	6	39	27
049_mis_G_T	15	348	285
050_mis_G_A	57	302	272
050_mis_G_C	3	39	20
050_mis_G_T	36	151	155
051_mis_A_C	31	264	231
051_mis_A_G	22	842	691
051_mis_A_T	11	68	52
052_mis_A_C	25	217	177
052_mis_A_G	12	114	80
052_mis_A_T	0	16	10
053_mis_A_C	61	309	264
053_mis_A_G	6	63	46
053_mis_A_T	2	13	8
054_mis_A_C	183	1220	958
054_mis_A_G	5	56	40
054_mis_A_T	6	16	16
055_mis_C_A	21	2623	2098
055_mis_C_G	0	1	5
055_mis_C_T	6	56	30
056_mis_C_A	15	77	61
056_mis_C_G	1	11	5
056_mis_C_T	10	52	56
057_mis_C_A	7	34	43
057_mis_C_G	0	11	5
057_mis_C_T	36	153	115
058_mis_T_A	10	58	58
058_mis_T_C	28	1509	1264
058_mis_T_G	76	370	339
059_mis_G_A	19	120	107
059_mis_G_C	16	103	69
059_mis_G_T	24	1103	942
060_mis_G_A	7	54	54
060_mis_G_C	283	1172	1025
060_mis_G_T	70	284	244
061_mis_C_A	5	29	38
061_mis_C_G	16	138	121
061_mis_C_T	14	127	111
062_mis_G_A	7	71	52
062_mis_G_C	5	503	457
062_mis_G_T	60	266	199
063_mis_T_A	10	78	74
063_mis_T_C	17	239	166
063_mis_T_G	21	2738	2160
064_mis_T_A	32	131	125
064_mis_T_C	11	146	104
064_mis_T_G	3	17	12
065_mis_A_C	327	1462	1227
065_mis_A_G	13	80	66
065_mis_A_T	18	672	598
066_mis_C_A	27	614	459
066_mis_C_G	1	10	12
066_mis_C_T	7	79	61
067_mis_C_A	9	164	124
067_mis_C_G	0	17	15
067_mis_C_T	11	69	64
068_mis_C_A	76	370	306
068_mis_C_G	1	16	15
068_mis_C_T	10	86	65
069_mis_A_C	19	99	80
069_mis_A_G	11	79	69
069_mis_A_T	1	17	11
070_mis_A_C	37	297	228
070_mis_A_G	7	109	81
070_mis_A_T	8	71	66
071_mis_C_A	6	78	68
071_mis_C_G	0	5	6
071_mis_C_T	7	37	40
072_mis_T_A	3	25	20
072_mis_T_C	7	98	70
072_mis_T_G	9	36	37
073_mis_T_A	4	45	38
073_mis_T_C	7	86	67
073_mis_T_G	3	23	28
074_mis_A_C	4	127	92
074_mis_A_G	5	61	63
074_mis_A_T	13	90	65
075_mis_A_C	6	68	38
075_mis_A_G	7	60	44
075_mis_A_T	5	45	45
076_mis_T_A	8	133	111
076_mis_T_C	19	98	95
076_mis_T_G	3	56	51
077_mis_C_A	7	36	22
077_mis_C_G	1	7	11
077_mis_C_T	7	67	55
078_mis_G_A	8	129	89
078_mis_G_C	7	72	61
078_mis_G_T	12	57	60
079_mis_C_A	6	63	67
079_mis_C_G	0	23	13
079_mis_C_T	4	38	35
080_mis_C_A	8	37	29
080_mis_C_G	2	8	7
080_mis_C_T	6	58	51
081_mis_T_A	2	54	51
081_mis_T_C	13	110	88
081_mis_T_G	4	86	53
082_mis_T_A	4	40	23
082_mis_T_C	13	124	116
082_mis_T_G	1	34	31
083_mis_G_A	6	80	61
083_mis_G_C	9	58	38
083_mis_G_T	12	121	98
084_mis_C_A	1	35	27
084_mis_C_G	3	24	28
084_mis_C_T	13	159	136
085_mis_A_C	7	107	55
085_mis_A_G	18	142	142
085_mis_A_T	1	18	15
086_mis_G_A	3	104	87
086_mis_G_C	10	47	47
086_mis_G_T	7	74	54
087_mis_C_A	18	58	44
087_mis_C_G	0	16	7
087_mis_C_T	4	60	45
088_mis_A_C	20	235	196
088_mis_A_G	14	115	116
088_mis_A_T	12	106	82
089_mis_C_A	3	40	39
089_mis_C_G	0	9	8
089_mis_C_T	5	66	56
090_mis_A_C	3	164	142
090_mis_A_G	15	92	82
090_mis_A_T	8	77	53
091_mis_T_A	6	87	73
091_mis_T_C	17	149	132
091_mis_T_G	15	42	45
092_mis_C_A	6	31	26
092_mis_C_G	3	17	6
092_mis_C_T	4	41	50
093_mis_C_A	3	72	58
093_mis_C_G	0	16	18
093_mis_C_T	2	73	51
094_mis_C_A	4	41	26
094_mis_C_G	2	13	13
094_mis_C_T	4	39	28
095_mis_C_A	2	23	36
095_mis_C_G	0	14	7
095_mis_C_T	8	34	35
096_mis_C_A	5	40	27
096_mis_C_G	0	6	5
096_mis_C_T	13	129	98
097_mis_T_A	5	33	34
097_mis_T_C	5	107	98
097_mis_T_G	2	23	11
098_mis_T_A	3	61	46
098_mis_T_C	8	121	105
098_mis_T_G	9	34	39
099_mis_T_A	2	23	15
099_mis_T_C	19	127	120
099_mis_T_G	6	36	33
100_mis_C_A	3	16	12
100_mis_C_G	1	7	1
100_mis_C_T	10	72	68
101_mis_G_A	25	200	178
101_mis_G_C	7	74	59
101_mis_G_T	10	57	36
102_mis_C_A	6	48	42
102_mis_C_G	0	21	24
102_mis_C_T	23	197	153
103_mis_C_A	2	28	18
103_mis_C_G	1	12	19
103_mis_C_T	11	83	72
104_mis_A_C	2	41	46
104_mis_A_G	12	108	81
104_mis_A_T	5	23	26
105_mis_G_A	3	47	37
105_mis_G_C	2	13	15
105_mis_G_T	7	70	80
106_mis_C_A	6	71	72
106_mis_C_G	2	16	13
106_mis_C_T	2	34	33
107_mis_T_A	5	22	27
107_mis_T_C	9	104	79
107_mis_T_G	18	119	132
108_mis_G_A	7	67	74
108_mis_G_C	2	21	21
108_mis_G_T	2	56	51
109_mis_G_A	14	130	107
109_mis_G_C	1	9	17
109_mis_G_T	15	65	56
110_mis_C_A	25	115	77
110_mis_C_G	78	312	225
110_mis_C_T	29	265	215
111_mis_G_A	16	149	114
111_mis_G_C	1	33	26
111_mis_G_T	12	66	75
112_mis_T_A	25	205	162
112_mis_T_C	8	84	61
112_mis_T_G	278	2421	1944
113_mis_A_C	0	16	12
113_mis_A_G	13	157	118
113_mis_A_T	3	39	35
114_mis_A_C	1	21	17
114_mis_A_G	12	109	109
114_mis_A_T	4	78	51
115_mis_T_A	60	561	436
115_mis_T_C	9	103	87
115_mis_T_G	128	1139	902
116_mis_A_C	26	275	268
116_mis_A_G	30	267	201
116_mis_A_T	9	45	31
117_mis_G_A	4	74	58
117_mis_G_C	7	48	39
117_mis_G_T	4	36	34
118_mis_C_A	28	276	178
118_mis_C_G	40	412	273
118_mis_C_T	9	118	102
119_mis_G_A	13	85	66
119_mis_G_C	3	44	44
119_mis_G_T	9	37	24
120_mis_A_C	17	215	141
120_mis_A_G	27	248	206
120_mis_A_T	3	48	53
121_mis_A_C	2	37	37
121_mis_A_G	47	482	357
121_mis_A_T	3	37	22
122_mis_G_A	7	74	65
122_mis_G_C	0	31	21
122_mis_G_T	7	56	38
123_mis_A_C	2	26	17
123_mis_A_G	39	425	315
123_mis_A_T	0	26	17
124_mis_G_A	11	112	79
124_mis_G_C	1	17	17
124_mis_G_T	58	476	441
125_mis_G_A	15	78	72
125_mis_G_C	5	48	37
125_mis_G_T	95	725	530
126_mis_C_A	24	241	101
126_mis_C_G	62	690	378
126_mis_C_T	73	755	357
127_mis_C_A	20	205	145
127_mis_C_G	7	163	125
127_mis_C_T	28	303	217
128_mis_C_A	53	290	242
128_mis_C_G	39	355	271
128_mis_C_T	27	256	198
129_mis_G_A	16	258	227
129_mis_G_C	4	69	56
129_mis_G_T	2	47	36
130_mis_C_A	73	721	629
130_mis_C_G	37	327	243
130_mis_C_T	6	98	77
131_mis_A_C	262	2346	1733
131_mis_A_G	44	390	289
131_mis_A_T	3	65	54
132_mis_C_A	33	345	292
132_mis_C_G	12	122	110
132_mis_C_T	8	59	63
133_mis_C_A	10	120	66
133_mis_C_G	10	136	100
133_mis_C_T	11	62	75
134_mis_G_A	12	77	74
134_mis_G_C	4	38	30
134_mis_G_T	14	113	99
135_mis_A_C	22	323	258
135_mis_A_G	34	266	241
135_mis_A_T	7	85	66
136_mis_T_A	22	182	129
136_mis_T_C	30	270	211
136_mis_T_G	54	346	318
137_mis_C_A	19	191	132
137_mis_C_G	13	143	113
137_mis_C_T	14	108	80
138_mis_G_A	19	169	151
138_mis_G_C	12	128	96
138_mis_G_T	4	61	50
139_mis_C_A	60	499	385
139_mis_C_G	19	164	138
139_mis_C_T	5	71	67
140_mis_C_A	70	517	449
140_mis_C_G	13	244	220
140_mis_C_T	11	101	84
141_mis_C_A	19	174	137
141_mis_C_G	5	72	53
141_mis_C_T	16	190	147
142_mis_T_A	10	78	73
142_mis_T_C	19	205	165
142_mis_T_G	173	1491	1105
143_mis_T_A	23	165	121
143_mis_T_C	32	301	194
143_mis_T_G	264	2417	1896
144_mis_C_A	15	186	169
144_mis_C_G	10	124	76
144_mis_C_T	6	128	94
145_mis_C_A	59	529	429
145_mis_C_G	5	51	47
145_mis_C_T	10	87	76
146_mis_C_A	76	796	561
146_mis_C_G	1	31	23
146_mis_C_T	11	93	82
147_mis_A_C	12	104	58
147_mis_A_G	10	139	114
147_mis_A_T	2	31	33
148_mis_A_C	21	242	163
148_mis_A_G	15	191	148
148_mis_A_T	5	111	83
149_mis_C_A	30	263	202
149_mis_C_G	6	27	20
149_mis_C_T	3	52	52
150_mis_A_C	35	320	235
150_mis_A_G	18	265	177
150_mis_A_T	2	25	21
151_mis_G_A	15	93	85
151_mis_G_C	2	13	10
151_mis_G_T	11	110	84
152_mis_T_A	5	60	43
152_mis_T_C	10	92	108
152_mis_T_G	62	535	384
153_mis_T_A	6	53	31
153_mis_T_C	23	265	195
153_mis_T_G	228	2002	1633
154_mis_G_A	11	86	56
154_mis_G_C	2	36	37
154_mis_G_T	9	84	73
155_mis_C_A	17	140	115
155_mis_C_G	33	300	205
155_mis_C_T	40	359	282
156_mis_G_A	12	126	105
156_mis_G_C	10	85	65
156_mis_G_T	5	59	48
157_mis_C_A	33	419	348
157_mis_C_G	15	108	88
157_mis_C_T	5	71	50
158_mis_A_C	27	202	160
158_mis_A_G	73	897	645
158_mis_A_T	3	44	46
159_mis_G_A	15	73	44
159_mis_G_C	5	27	27
159_mis_G_T	55	506	329
160_mis_C_A	18	142	145
160_mis_C_G	28	347	224
160_mis_C_T	8	124	101
161_mis_C_A	36	408	267
161_mis_C_G	8	100	77
161_mis_C_T	6	84	76
162_mis_T_A	37	363	247
162_mis_T_C	18	190	168
162_mis_T_G	63	673	518
163_mis_G_A	19	186	123
163_mis_G_C	1	14	14
163_mis_G_T	19	156	116
164_mis_A_C	2	19	19
164_mis_A_G	16	160	123
164_mis_A_T	5	86	65
165_mis_A_C	1	17	11
165_mis_A_G	26	271	207
165_mis_A_T	6	34	41
166_mis_T_A	25	301	236
166_mis_T_C	9	96	97
166_mis_T_G	158	1562	1070
167_mis_G_A	20	191	175
167_mis_G_C	0	13	9
167_mis_G_T	2	36	29
168_mis_G_A	32	378	309
168_mis_G_C	3	26	28
168_mis_G_T	2	55	48
169_mis_C_A	23	245	187
169_mis_C_G	21	188	140
169_mis_C_T	20	288	228
170_mis_G_A	10	155	91
170_mis_G_C	6	27	26
170_mis_G_T	4	62	39
171_mis_A_C	57	500	408
171_mis_A_G	7	127	101
171_mis_A_T	5	73	68
172_mis_A_C	2	27	28
172_mis_A_G	17	193	133
172_mis_A_T	2	44	34
173_mis_T_A	16	146	130
173_mis_T_C	7	89	72
173_mis_T_G	69	568	450
174_mis_G_A	11	109	92
174_mis_G_C	2	34	22
174_mis_G_T	2	48	42
175_mis_G_A	11	112	108
175_mis_G_C	2	26	12
175_mis_G_T	50	417	347
176_mis_C_A	78	708	536
176_mis_C_G	28	293	167
176_mis_C_T	42	520	409
177_mis_G_A	10	128	99
177_mis_G_C	3	19	23
177_mis_G_T	4	90	69
178_mis_C_A	71	733	465
178_mis_C_G	13	154	108
178_mis_C_T	12	102	101
179_mis_T_A	12	200	149
179_mis_T_C	5	88	75
179_mis_T_G	32	403	332
180_mis_A_C	24	125	112
180_mis_A_G	5	41	44
180_mis_A_T	14	92	66
181_mis_A_C	11	128	98
181_mis_A_G	6	43	59
181_mis_A_T	10	62	44
182_mis_T_A	17	194	108
182_mis_T_C	7	56	46
182_mis_T_G	25	274	184
183_mis_A_C	15	142	127
183_mis_A_G	4	40	46
183_mis_A_T	8	68	60
184_mis_A_C	16	145	105
184_mis_A_G	8	81	80
184_mis_A_T	2	45	35
185_mis_G_A	13	141	108
185_mis_G_C	3	42	18
185_mis_G_T	14	147	110
186_mis_A_C	14	157	122
186_mis_A_G	5	66	74
186_mis_A_T	5	57	39
187_mis_T_A	19	187	152
187_mis_T_C	9	67	67
187_mis_T_G	28	268	201
188_mis_A_C	14	196	130
188_mis_A_G	7	41	56
188_mis_A_T	12	84	52
189_mis_T_A	14	120	122
189_mis_T_C	11	107	74
189_mis_T_G	33	219	165
190_mis_C_A	26	246	171
190_mis_C_G	0	18	9
190_mis_C_T	2	25	24
191_mis_A_C	33	267	205
191_mis_A_G	4	62	37
191_mis_A_T	6	67	63
192_mis_T_A	17	127	118
192_mis_T_C	25	155	136
192_mis_T_G	31	281	227
193_mis_C_A	8	105	78
193_mis_C_G	1	62	36
193_mis_C_T	1	20	20
194_mis_G_A	8	47	42
194_mis_G_C	6	64	30
194_mis_G_T	4	34	31
195_mis_G_A	8	83	62
195_mis_G_C	13	118	82
195_mis_G_T	17	174	135
196_mis_C_A	13	81	59
196_mis_C_G	28	246	242
196_mis_C_T	27	195	163
197_mis_T_A	4	28	15
197_mis_T_C	6	29	37
197_mis_T_G	21	165	114
198_mis_T_A	2	60	31
198_mis_T_C	3	64	42
198_mis_T_G	58	519	432
199_mis_T_A	1	19	17
199_mis_T_C	19	169	116
199_mis_T_G	20	230	173

## Raw table: miss_reads_by_ref_nt.

	s1	s2	s3
A	11089	185513	642747
C	61814	454411	1027101
G	59338	394848	524396
T	10714	122061	247384

## Raw table: miss_indexes_by_ref_nt.

	s1	s2	s3
A	2275	21657	67872
C	11795	51395	106854
G	11616	44665	55605
T	2296	15557	29241

## Raw table: miss_sequencer_by_ref_nt.

	s1	s2	s3
A	3290	28892	23544
C	2639	28670	22008
G	2054	20250	17008
T	3938	42299	34232

## Raw table: miss_reads_by_hit_nt.

	s1	s2	s3
A	59725	583633	768181
C	11818	82889	185317
G	10861	207526	696018
T	60551	282785	792112

## Raw table: miss_indexes_by_hit_nt.

	s1	s2	s3
A	11230	65291	80608
C	2459	10666	22026
G	2285	24716	74627
T	12008	32601	82311

## Raw table: miss_sequencer_by_hit_nt.

	s1	s2	s3
A	2301	24749	19533
C	3882	35111	29333
G	3754	41050	32522
T	1984	19201	15404

## Raw table: miss_reads_by_type.

	s1	s2	s3
A_C	6600	36402	80208
A_G	3424	131463	516538
A_T	1065	17648	46001
C_A	49857	261579	329363
C_G	1743	32557	93322
C_T	10214	160275	604416
G_A	8777	277538	359399
G_C	1289	12448	23302
G_T	49272	104862	141695
T_A	1091	44516	79419
T_C	3929	34039	81807
T_G	5694	43506	86158

## Raw table: miss_indexes_by_type.

	s1	s2	s3
A_C	1299	4516	9418
A_G	731	14896	53401
A_T	245	2245	5053
C_A	9307	29486	34851
C_G	355	3848	10038
C_T	2133	18061	61965
G_A	1685	30686	37225
G_C	301	1684	3087
G_T	9630	12295	15293
T_A	238	5119	8532
T_C	859	4466	9521
T_G	1199	5972	11188

## Raw table: miss_sequencer_by_type.

	s1	s2	s3
A_C	2393	18295	15010
A_G	659	7440	5942
A_T	238	3157	2592
C_A	1283	15254	11862
C_G	617	6073	4443
C_T	739	7343	5703
G_A	555	5215	4268
G_C	492	6334	5631
G_T	1007	8701	7109
T_A	463	4280	3403
T_C	997	10482	8692
T_G	2478	27537	22137

## Raw table: miss_reads_by_trans.

	s1	s2	s3
transition	26344	603315	1562160
transversion	116611	553518	879468

## Raw table: miss_indexes_by_trans.

	s1	s2	s3
transition	5408	68109	162112
transversion	22574	65165	97460

## Raw table: miss_sequencer_by_trans.

	s1	s2	s3
transition	2950	30480	24605
transversion	8971	89631	72187

## Raw table: miss_reads_by_strength.

	s1	s2	s3
strong_strong	3032	45005	116624
strong_weak	118120	804254	1434873
weak_strong	19647	245410	764711
weak_weak	2156	62164	125420

## Raw table: miss_indexes_by_strength.

	s1	s2	s3
strong_strong	656	5532	13125
strong_weak	22755	90528	149334
weak_strong	4088	29850	83528
weak_weak	483	7364	13585

## Raw table: miss_sequencer_by_strength.

	s1	s2	s3
strong_strong	1109	12407	10074
strong_weak	3584	36513	28942
weak_strong	6527	63754	51781
weak_weak	701	7437	5995

## Raw table: insert_reads_by_position.

	s1	s2	s3
24	0	0	13
25	0	7	0
26	0	4	0
27	0	12	0
28	0	0	13
29	0	0	4
30	0	17	78
35	0	0	24
36	0	7	8
42	0	14	0
44	0	0	5
45	0	0	13
46	6	9	36
47	0	5	3
48	0	156	829
50	0	0	20
51	4	194	3465
52	0	0	144
55	0	0	256
58	0	0	3
59	0	0	7
61	0	0	3
62	0	3	0
69	0	0	5
72	0	0	483
81	0	0	64
91	0	72	698
92	6	191	219
93	0	0	36
97	0	260	753
100	0	23	0
105	0	0	8
110	0	0	4
120	0	0	4
123	0	0	320
124	0	0	4
126	7	0	0
130	0	0	5
132	0	10	0
134	4	0	0
137	0	0	10
138	0	0	4
142	0	0	31
144	0	0	90
148	0	0	20
149	0	12	0
151	0	12	0
154	0	64	0
156	0	6	0
171	7	0	4
174	7	0	0
177	0	0	8
182	6	0	0
190	0	0	6

## Raw table: insert_indexes_by_position.

	s1	s2	s3
24	0	0	1
25	0	1	0
26	0	1	0
27	0	1	0
28	0	0	1
29	0	0	1
30	0	3	8
35	0	0	2
36	0	1	1
42	0	1	0
44	0	0	1
45	0	0	1
46	2	1	4
47	0	1	1
48	0	19	77
50	0	0	2
51	1	25	358
52	0	0	12
55	0	0	16
58	0	0	1
59	0	0	1
61	0	0	1
62	0	1	0
69	0	0	1
72	0	0	39
81	0	0	8
91	0	8	72
92	1	20	35
93	0	0	6
97	0	40	83
100	0	3	0
105	0	0	2
110	0	0	1
120	0	0	1
123	0	0	24
124	0	0	1
126	1	0	0
130	0	0	1
132	0	1	0
134	1	0	0
137	0	0	1
138	0	0	1
142	0	0	7
144	0	0	9
148	0	0	4
149	0	4	0
151	0	4	0
154	0	8	0
156	0	1	0
171	1	0	1
174	1	0	0
177	0	0	1
182	1	0	0
190	0	0	1

## Raw table: insert_sequencer_by_position.

	s1	s2	s3
24	0	1	2
26	0	2	0
28	0	1	0
29	0	4	4
30	0	0	2
34	0	2	3
35	0	3	0
36	0	2	2
38	0	2	2
39	0	2	0
40	0	2	0
41	0	0	1
42	0	2	4
45	0	2	0
46	0	2	3
48	2	5	5
51	0	3	5
52	0	0	1
55	0	0	3
58	0	2	1
59	0	1	0
61	1	1	0
62	0	1	0
63	0	1	0
66	0	4	0
69	0	1	1
92	2	16	14
97	0	0	3
108	0	1	1
111	0	2	1
115	0	2	1
116	0	0	1
117	0	1	1
119	0	1	0
122	0	1	1
124	0	1	0
126	0	0	1
129	0	1	2
131	0	1	0
134	0	1	0
136	0	1	0
138	0	2	1
142	0	0	1
144	0	0	1
146	0	1	0
147	0	1	1
149	0	3	6
151	0	2	3
154	0	0	2
155	0	1	1
156	0	5	0
157	0	2	0
159	0	1	0
160	0	0	1
162	0	2	0
163	0	1	0
164	0	0	2
166	0	2	0
167	0	1	1
168	0	1	0
170	1	0	2
171	0	0	3
177	0	1	0
178	0	1	0
180	0	1	0
183	0	1	1
186	0	1	0
188	0	0	1
189	0	1	0
194	0	2	0

## Raw table: insert_reads_by_nt.

	s1	s2	s3
A	11	206	3845
C	19	239	713
G	11	266	1004
T	6	367	2138

## Raw table: insert_indexes_by_nt.

	s1	s2	s3
A	2	27	390
C	4	27	79
G	2	36	95
T	1	54	224

## Raw table: insert_sequencer_by_nt.

	s1	s2	s3
A	0	17	22
C	3	37	32
G	3	41	28
T	0	13	10

## Raw table: delete_reads_by_position.

s1	s2	s3

## Raw table: delete_indexes_by_position.

s1	s2	s3

## Raw table: delete_sequencer_by_position.

s1	s2	s3

## Raw table: delete_reads_by_nt.

s1	s2	s3

## Raw table: delete_indexes_by_nt.

s1	s2	s3

## Raw table: delete_sequencer_by_nt.

s1	s2	s3

3 Print raw plots

for (t in 1:length(data_summary[["matrices"]])) {
  message("Raw table: ", table_name, ".")
  print(data_plots[["matrices"]][t])
}

## Raw table: delete_sequencer_by_nt.

## $miss_reads_by_position

## Raw table: delete_sequencer_by_nt.

## $miss_indexes_by_position

## Raw table: delete_sequencer_by_nt.

## $miss_sequencer_by_position

## Raw table: delete_sequencer_by_nt.

## $miss_reads_by_string

## Raw table: delete_sequencer_by_nt.

## $miss_indexes_by_string

## Raw table: delete_sequencer_by_nt.

## $miss_sequencer_by_string

## Raw table: delete_sequencer_by_nt.

## $miss_reads_by_ref_nt

## Raw table: delete_sequencer_by_nt.

## $miss_indexes_by_ref_nt

## Raw table: delete_sequencer_by_nt.

## $miss_sequencer_by_ref_nt

## Raw table: delete_sequencer_by_nt.

## $miss_reads_by_hit_nt

## Raw table: delete_sequencer_by_nt.

## $miss_indexes_by_hit_nt

## Raw table: delete_sequencer_by_nt.

## $miss_sequencer_by_hit_nt

## Raw table: delete_sequencer_by_nt.

## $miss_reads_by_type

## Raw table: delete_sequencer_by_nt.

## $miss_indexes_by_type

## Raw table: delete_sequencer_by_nt.

## $miss_sequencer_by_type

## Raw table: delete_sequencer_by_nt.

## $miss_reads_by_trans

## Raw table: delete_sequencer_by_nt.

## $miss_indexes_by_trans

## Raw table: delete_sequencer_by_nt.

## $miss_sequencer_by_trans

## Raw table: delete_sequencer_by_nt.

## $miss_reads_by_strength

## Raw table: delete_sequencer_by_nt.

## $miss_indexes_by_strength

## Raw table: delete_sequencer_by_nt.

## $miss_sequencer_by_strength

## Raw table: delete_sequencer_by_nt.

## $insert_reads_by_position

## Raw table: delete_sequencer_by_nt.

## $insert_indexes_by_position

## Raw table: delete_sequencer_by_nt.

## $insert_sequencer_by_position

## Raw table: delete_sequencer_by_nt.

## $insert_reads_by_nt

## Raw table: delete_sequencer_by_nt.

## $insert_indexes_by_nt

## Raw table: delete_sequencer_by_nt.

## $insert_sequencer_by_nt

## Raw table: delete_sequencer_by_nt.

## $delete_reads_by_position

## Raw table: delete_sequencer_by_nt.

## $delete_indexes_by_position

## Raw table: delete_sequencer_by_nt.

## $delete_sequencer_by_position

## Raw table: delete_sequencer_by_nt.

## $delete_reads_by_nt

## Raw table: delete_sequencer_by_nt.

## $delete_indexes_by_nt

## Raw table: delete_sequencer_by_nt.

## $delete_sequencer_by_nt

4 Print normalized tables

for (t in 1:length(data_summary[["normalized"]])) {
  table_name <- names(data_summary[["normalized"]])[t]
  message("Normalized table: ", table_name, ".")
  print(knitr::kable(data_summary[["normalized"]][t]))
}

## Normalized table: miss_reads_by_position.

	s1	s2	s3
24	7568.8	6045.0	8502.5
25	7247.0	8513.8	4927.9
26	10143.1	14563.0	11430.9
27	3140.8	3723.1	4505.6
28	3777.4	5726.8	6529.7
29	12619.4	10780.3	7280.8
30	10171.0	6734.8	6507.5
31	636.6	937.0	1522.8
32	909.4	516.9	533.7
33	741.5	941.4	2075.7
34	5708.1	4914.3	7372.1
35	3952.3	7430.6	10348.8
36	2217.5	6549.8	7663.7
37	7953.6	5349.1	8548.0
38	7107.1	6685.5	8260.5
39	8674.1	12459.9	8333.4
40	2623.2	3326.3	3560.7
41	6064.8	3577.9	5740.8
42	8002.5	9790.5	5673.7
43	3357.7	4651.5	4463.0
44	14452.1	8654.7	5930.5
45	3735.4	5554.0	12417.5
46	3294.7	11137.3	17716.5
47	5862.0	6872.2	6290.1
48	8107.4	8821.5	7138.7
49	10919.5	13231.8	7631.4
50	6463.6	10605.7	20476.1
51	4176.1	8970.2	12089.9
52	454.7	5898.0	12369.6
53	804.4	7381.4	12960.2
54	19152.9	12446.0	11789.7
55	6715.4	10623.8	9909.0
56	10394.9	6020.7	5339.1
57	20873.7	9501.8	5381.7
58	5183.4	5477.9	4320.1
59	20111.2	11979.3	6305.2
60	24958.9	12732.2	6514.5
61	9128.7	8510.3	10372.6
62	8548.1	10559.9	5563.5
63	1007.3	4951.4	4846.8
64	762.5	2181.8	1868.8
65	4239.1	8210.3	11928.1
66	2441.3	10418.1	18841.1
67	3952.3	6525.6	5443.9
68	11507.1	6872.2	5024.5
69	1350.1	2369.4	2121.5
70	1392.0	3341.9	6526.4
71	3539.6	6120.2	8914.1
72	377.7	341.4	1082.5
73	195.9	1134.1	888.3
74	468.7	4181.2	5020.4
75	188.9	5001.6	9301.6
76	664.5	3271.9	2809.2
77	8303.3	6274.9	6699.6
78	17823.8	8958.1	5928.8
79	8065.5	6637.1	8038.5
80	4896.6	3908.9	4725.5
81	503.7	727.8	1445.3
82	202.9	1845.6	1803.7
83	13220.9	7107.3	4213.2
84	10185.0	6453.8	10132.2
85	664.5	1811.8	3136.8
86	13731.6	8909.7	5869.4
87	10660.7	9102.4	12219.7
88	811.4	2768.8	3114.3
89	2511.3	9124.9	10214.9
90	587.6	2436.0	5399.3
91	678.5	3382.5	2332.9
92	5645.1	4623.8	4371.3
93	6498.5	7316.5	6773.8
94	10555.8	8991.8	5065.9
95	12080.7	6213.5	3909.7
96	9856.2	7296.6	4354.9
97	566.6	1978.7	1352.4
98	447.7	1303.6	1461.3
99	461.7	708.8	407.9
100	8275.3	21427.5	14412.9
101	9618.4	7539.5	3795.4
102	10534.8	4415.5	5142.9
103	5036.6	3760.3	2729.7
104	447.7	1733.2	2301.7
105	13332.9	8426.5	5871.5
106	7156.1	8557.8	9233.2
107	601.6	3154.3	2013.0
108	7799.7	6497.9	3204.4
109	9996.2	7183.4	4735.4
110	13144.0	8610.6	11025.8
111	16627.6	9675.6	4306.6
112	4742.8	4582.3	4224.6
113	202.9	3500.1	6424.0
114	538.6	6376.0	12583.8
115	1874.7	5194.4	4587.1
116	2777.1	4021.3	6454.3
117	8751.0	8323.6	4223.0
118	9478.5	8770.5	9877.0
119	8002.5	8440.3	3689.3
120	629.6	3072.2	5051.5
121	1098.2	6347.5	11421.1
122	2224.5	4468.2	3990.0
123	1000.3	4929.8	9933.9
124	5204.4	5936.0	3951.1
125	18495.3	8919.2	4866.0
126	21664.2	9781.0	10663.4
127	10094.1	5057.8	3992.8
128	14277.2	9020.3	6071.8
129	18474.3	11738.9	5855.1
130	9471.5	10887.5	10785.0
131	3819.4	4896.1	6138.1
132	5253.4	6799.6	10160.8
133	10527.8	4967.0	5065.9
134	5435.3	7476.4	2768.6
135	1462.0	3039.3	4805.4
136	1084.3	1822.2	2334.9
137	4910.6	5097.5	4608.8
138	12423.5	6819.5	4157.1
139	5980.9	7313.9	9227.9
140	4483.9	4036.9	5312.4
141	7324.0	5065.6	4489.6
142	3070.9	2652.1	2770.3
143	3126.9	4098.3	3794.2
144	4973.6	5254.0	5941.9
145	5708.1	5686.2	4441.3
146	10926.5	6026.8	5576.2
147	482.7	1135.9	2206.3
148	818.4	2807.7	4753.4
149	4861.7	7491.1	9133.7
150	1077.3	2895.0	3510.8
151	8289.3	7654.5	3931.4
152	1371.1	3445.6	3470.2
153	3091.9	3347.1	3480.5
154	7624.8	6338.9	3267.5
155	8688.0	8553.5	8337.5
156	11898.8	8795.6	5306.3
157	8548.1	8485.2	10474.6
158	2280.4	4004.0	4607.6
159	9275.6	6481.5	4754.6
160	6631.5	6827.3	10691.2
161	5931.9	3877.0	4559.7
162	5966.9	4196.8	2808.4
163	6939.2	8159.3	3727.0
164	433.7	2548.3	5325.1
165	384.7	4804.5	11686.9
166	2476.3	4684.3	3718.8
167	9366.6	6414.1	3971.9
168	10492.8	8262.2	4645.3
169	8772.0	7895.7	7810.8
170	5365.3	7605.2	4112.4
171	1189.2	3997.1	5544.3
172	622.6	7301.0	14883.9
173	1000.3	4389.6	3112.7
174	6617.5	7271.6	4130.9
175	10366.9	10135.4	5095.8
176	15431.4	8820.6	8924.8
177	11982.8	10084.4	3600.9
178	6260.7	7525.7	8483.7
179	1238.2	1597.5	1338.5
180	524.6	681.2	1650.5
181	489.7	1132.4	2986.5
182	741.5	929.3	1209.4
183	699.5	644.0	1139.0
184	349.8	779.7	1925.4
185	1056.3	791.8	1905.3
186	671.5	833.3	2545.0
187	1042.3	1058.9	1467.1
188	909.4	861.8	2333.7
189	818.4	1051.1	1131.6
190	559.6	912.8	1240.2
191	755.5	837.6	1273.7
192	1203.2	1109.9	1285.6
193	237.8	1017.4	1170.5
194	363.8	691.5	739.7
195	1280.1	2033.1	1880.7
196	433.7	1209.3	3317.9
197	538.6	534.2	607.4
198	1601.9	1232.7	2147.3
199	860.4	1423.7	1739.4

## Normalized table: miss_indexes_by_position.

	s1	s2	s3
24	7040.2	6482.9	7978.5
25	7826.5	8313.7	5000.5
26	11042.8	14564.0	11291.7
27	3859.6	4419.5	4931.2
28	4145.5	5882.6	6730.3
29	12007.7	11165.0	7208.0
30	11114.3	7270.7	7115.6
31	857.7	840.4	1336.8
32	1000.6	532.7	689.6
33	1036.4	930.4	1960.9
34	6825.8	5987.7	7678.0
35	4574.4	7518.3	10424.9
36	2501.6	7270.7	8729.8
37	8005.1	5837.6	8806.8
38	6075.3	6655.5	8128.8
39	9613.3	12703.2	8679.7
40	3144.9	4111.8	3998.9
41	6361.2	3789.2	5670.9
42	8898.6	9701.8	5944.4
43	3752.4	5342.4	5204.7
44	12365.1	8306.2	5967.5
45	4324.2	5882.6	11861.8
46	3109.1	10542.2	16219.0
47	6218.3	7788.5	7119.4
48	8505.5	9071.5	6526.1
49	10149.4	12508.1	7165.6
50	6861.6	11022.4	19736.3
51	4538.6	9476.7	11858.0
52	571.8	5409.9	11542.1
53	893.4	6880.6	12281.8
54	18118.8	11442.6	11295.5
55	6897.3	11270.0	11145.3
56	9577.6	5530.0	5062.2
57	21370.9	9079.0	5235.5
58	5896.6	7240.7	5432.0
59	18654.8	10992.4	6445.2
60	25159.0	11570.1	6568.5
61	9077.3	8501.3	10405.6
62	8970.1	10017.0	5501.4
63	1286.5	6167.7	6021.5
64	857.7	2198.5	1918.5
65	5110.4	8103.6	11888.8
66	2573.1	10632.2	18079.8
67	4217.0	6242.8	5208.6
68	10649.7	5882.6	4723.2
69	1143.6	2416.1	2180.5
70	1286.5	3609.1	6514.6
71	3716.7	6017.7	8887.7
72	500.3	435.2	1078.7
73	250.2	1005.4	901.5
74	500.3	3526.6	5062.2
75	178.7	4929.7	8749.0
76	679.0	3076.4	2789.2
77	7683.5	6122.7	6722.6
78	16975.2	8478.8	5593.8
79	8541.2	6032.7	7373.7
80	4681.6	3774.2	4307.1
81	571.8	840.4	1548.7
82	250.2	1748.3	1880.0
83	13365.7	7030.6	4318.6
84	8434.0	6265.3	9577.3
85	893.4	2018.4	3004.9
86	13365.7	8929.0	5362.7
87	9684.8	8846.4	11526.7
88	964.9	2513.6	3174.5
89	2680.3	9079.0	9638.9
90	607.5	2551.1	5524.5
91	679.0	3068.9	2392.4
92	5825.2	4412.0	4168.4
93	6718.6	7023.1	6156.3
94	10614.0	8186.1	4788.7
95	11007.1	6445.4	3883.3
96	9935.0	6925.6	4626.8
97	571.8	1808.3	1371.5
98	571.8	1478.2	1460.1
99	500.3	735.3	550.9
100	8326.8	20311.5	14192.6
101	10328.1	7495.8	4145.3
102	10256.6	4524.5	5378.1
103	5324.9	3991.8	2951.0
104	607.5	1665.7	2199.8
105	13008.4	7705.9	5478.2
106	6825.8	7675.9	9199.8
107	786.2	2903.8	2103.5
108	8040.9	6295.3	3128.2
109	9792.0	6798.0	4661.5
110	12901.2	8944.0	10929.5
111	16260.5	9056.5	4276.3
112	4931.7	4982.2	4788.7
113	285.9	3714.2	6429.8
114	536.1	6355.3	12293.3
115	2251.4	5462.4	4873.4
116	2930.5	4014.3	6295.0
117	9041.5	8028.6	4260.9
118	9398.9	8726.4	9569.6
119	8291.0	8253.7	3594.4
120	714.7	3309.0	5004.4
121	1036.4	6265.3	11041.3
122	1643.9	4284.4	3883.3
123	1179.3	4562.0	9411.6
124	5825.2	6242.8	3998.9
125	18297.5	8921.5	4931.2
126	19119.4	9761.8	10332.4
127	10185.1	4959.7	4075.9
128	13615.9	8703.9	5778.7
129	19119.4	10482.2	5767.2
130	9434.6	10549.7	10166.7
131	3966.8	5342.4	6649.4
132	5146.2	6032.7	9777.6
133	9113.0	5072.3	4973.6
134	5074.7	7690.9	2835.4
135	1572.4	2993.8	4800.2
136	1250.8	1980.9	2588.9
137	4681.6	4959.7	4426.5
138	12222.1	7015.6	4345.6
139	5610.7	6873.1	9288.4
140	4431.4	4134.3	5015.9
141	7218.9	4914.7	4226.2
142	3037.7	3016.3	3228.4
143	3287.8	4689.6	4418.8
144	5575.0	5117.3	5751.8
145	5360.6	5192.3	4441.9
146	9470.4	5845.1	5732.5
147	500.3	1245.6	2149.7
148	1036.4	2791.2	4746.3
149	4717.3	7533.4	8787.5
150	1036.4	2611.2	3767.7
151	8505.5	7510.8	3756.2
152	1358.0	3691.6	3405.6
153	3359.3	3849.2	4079.8
154	8112.4	6107.7	3193.7
155	9684.8	8418.7	8279.0
156	11900.5	8823.9	5293.3
157	8005.1	9034.0	9754.5
158	2144.2	4194.4	4734.7
159	9684.8	7105.7	5216.3
160	7111.7	7293.2	10320.8
161	5825.2	3856.7	4422.7
162	5825.2	4637.1	3174.5
163	6361.2	7585.9	3763.9
164	536.1	2686.2	5127.7
165	428.8	4884.7	11542.1
166	3001.9	5424.9	4210.8
167	9935.0	6738.0	4222.3
168	11257.2	8238.7	4927.3
169	9041.5	7645.9	8151.9
170	5646.5	7833.5	4126.0
171	1322.3	4014.3	5859.6
172	679.0	7248.2	14577.8
173	1072.1	4524.5	3205.3
174	5324.9	6865.6	4052.8
175	11078.6	10384.6	5062.2
176	14366.4	9386.7	9396.2
177	11721.8	9521.7	3802.4
178	6397.0	7338.3	8679.7
179	1322.3	1913.4	1675.8
180	500.3	892.9	1668.1
181	464.6	1185.5	3105.1
182	714.7	1103.0	1340.7
183	643.3	862.9	1321.4
184	393.1	877.9	2145.8
185	1072.1	1013.0	2111.2
186	750.5	937.9	2550.4
187	1036.4	1223.0	1656.6
188	822.0	975.4	2442.5
189	750.5	1275.6	1429.3
190	607.5	1028.0	1379.2
191	750.5	1013.0	1460.1
192	1250.8	1463.2	1637.3
193	250.2	1088.0	1356.1
194	321.6	877.9	905.3
195	1322.3	2198.5	2169.0
196	500.3	1268.1	3247.7
197	500.3	592.8	758.9
198	1715.4	1620.7	2550.4
199	1000.6	1335.6	1822.2

## Normalized table: miss_sequencer_by_position.

	s1	s2	s3
24	1258.3	1540.2	1642.7
25	3858.7	2872.3	2768.8
26	6459.2	8550.4	10093.8
27	18287.1	17575.4	19040.8
28	2600.5	4079.6	3605.7
29	5284.8	4379.3	4380.5
30	3858.7	20464.4	21551.4
31	922.7	1290.5	1188.1
32	755.0	949.1	1115.8
33	3103.8	2031.5	2014.6
34	23571.8	13204.5	13844.1
35	6123.6	6402.4	6612.1
36	10989.0	27999.1	31479.9
37	24662.4	14594.8	15683.1
38	2181.0	6460.7	6374.5
39	13841.1	19815.0	21964.6
40	23320.2	21255.3	21479.0
41	1845.5	2947.3	2582.9
42	3858.7	9724.3	10507.1
43	25081.8	24935.3	25838.9
44	4278.2	6327.5	6705.1
45	35231.9	18899.2	18947.8
46	2516.6	3979.7	4080.9
47	26256.2	27099.9	29093.3
48	5117.0	4795.6	5010.7
49	2432.7	4287.7	4204.9
50	8053.0	4096.2	4618.2
51	5368.7	9774.3	10062.8
52	3103.8	2889.0	2758.5
53	5788.1	3205.4	3285.4
54	16273.8	10756.7	10476.1
55	2264.9	22312.7	22036.9
56	2181.0	1165.6	1260.4
57	3607.1	1648.5	1684.0
58	9563.0	16126.7	17160.5
59	4949.2	11039.8	11550.5
60	30198.8	12571.7	13668.5
61	2936.0	2447.7	2789.5
62	6039.8	6993.5	7314.7
63	4026.5	25434.8	24795.4
64	3858.7	2447.7	2489.9
65	30031.0	18432.9	19536.7
66	2936.0	5852.9	5496.3
67	1677.7	2081.4	2097.3
68	7298.0	3929.7	3987.9
69	2600.5	1623.5	1653.0
70	4362.1	3971.3	3874.3
71	1090.5	999.1	1177.8
72	1593.8	1323.8	1312.1
73	1174.4	1282.1	1374.1
74	1845.5	2314.5	2272.9
75	1509.9	1440.3	1312.1
76	2516.6	2389.5	2655.2
77	1258.3	915.8	909.2
78	2264.9	2148.0	2169.6
79	838.9	1032.4	1188.1
80	1342.2	857.5	898.8
81	1593.8	2081.4	1983.6
82	1509.9	1648.5	1756.3
83	2264.9	2156.3	2035.3
84	1426.1	1815.0	1973.3
85	2181.0	2222.9	2190.3
86	1677.7	1873.3	1942.3
87	1845.5	1115.6	991.8
88	3858.7	3796.5	4070.6
89	671.1	957.4	1064.1
90	2181.0	2772.4	2861.8
91	3187.7	2314.5	2582.9
92	1090.5	741.0	847.2
93	419.4	1340.4	1312.1
94	838.9	774.3	692.2
95	838.9	591.1	805.9
96	1509.9	1457.0	1343.1
97	1006.6	1357.1	1477.4
98	1677.7	1798.3	1963.0
99	2264.9	1548.6	1735.7
100	1174.4	790.9	836.8
101	3523.2	2755.8	2820.5
102	2432.7	2214.6	2262.6
103	1174.4	1024.1	1126.1
104	1593.8	1432.0	1580.7
105	1006.6	1082.3	1363.7
106	838.9	1007.4	1219.1
107	2684.3	2039.8	2458.9
108	922.7	1198.9	1508.4
109	2516.6	1698.4	1859.7
110	11072.9	5761.3	5341.4
111	2432.7	2064.8	2221.3
112	26088.4	22562.5	22388.2
113	1342.2	1765.0	1704.7
114	1426.1	1731.7	1828.7
115	16525.5	15011.1	14722.3
116	5452.6	4887.1	5165.7
117	1258.3	1315.4	1353.4
118	6459.2	6710.5	5713.3
119	2097.1	1382.1	1384.4
120	3942.6	4254.4	4132.6
121	4362.1	4629.1	4297.9
122	1174.4	1340.4	1281.1
123	3439.3	3971.3	3605.7
124	5872.0	5037.0	5548.0
125	9646.8	7085.1	6601.8
126	13337.8	14037.0	8637.1
127	4613.7	5586.5	5031.4
128	9982.4	7501.4	7345.6
129	1845.5	3113.8	3295.7
130	9730.7	9541.2	9804.5
131	25920.6	23320.1	21448.1
132	4445.9	4379.3	4804.1
133	2600.5	2647.6	2489.9
134	2516.6	1898.2	2097.3
135	5284.8	5611.5	5837.3
136	8891.9	6643.9	6798.1
137	3858.7	3679.9	3357.7
138	2936.0	2980.6	3068.4
139	7046.4	6111.0	6095.5
140	7885.2	7176.7	7779.6
141	3355.4	3630.0	3481.7
142	16944.9	14769.7	13875.1
143	26759.5	24002.8	22842.8
144	2600.5	3646.6	3502.4
145	6207.5	5553.2	5703.0
146	7381.9	7659.6	6880.7
147	2013.3	2281.2	2117.9
148	3439.3	4529.1	4070.6
149	3271.5	2847.4	2830.8
150	4613.7	5078.6	4473.5
151	2348.8	1798.3	1849.3
152	6459.2	5719.7	5527.3
153	21558.6	19315.5	19206.1
154	1845.5	1715.1	1715.0
155	7549.7	6652.2	6219.5
156	2264.9	2247.9	2252.3
157	4445.9	4978.7	5021.1
158	8640.2	9516.2	8792.0
159	6291.4	5045.3	4132.6
160	4529.8	5103.6	4855.8
161	4194.3	4928.8	4339.2
162	9898.5	10207.2	9639.2
163	3271.5	2963.9	2613.9
164	1929.4	2206.3	2138.6
165	2768.2	2680.9	2675.8
166	16106.0	16309.9	14495.0
167	1845.5	1998.2	2200.6
168	3103.8	3821.5	3977.6
169	5368.7	6002.8	5733.9
170	1677.7	2031.5	1611.7
171	5788.1	5827.9	5961.2
172	1761.6	2198.0	2014.6
173	7717.5	6685.5	6736.1
174	1258.3	1590.2	1611.7
175	5284.8	4620.7	4824.8
176	12415.1	12663.3	11488.6
177	1426.1	1973.2	1973.3
178	8053.0	8234.1	6963.4
179	4110.4	5753.0	5744.3
180	3607.1	2148.0	2293.6
181	2264.9	1939.9	2076.6
182	4110.4	4362.6	3492.0
183	2264.9	2081.4	2407.2
184	2181.0	2256.2	2272.9
185	2516.6	2747.5	2438.2
186	2013.3	2331.2	2427.9
187	4697.6	4346.0	4339.2
188	2768.2	2672.5	2458.9
189	4865.4	3713.2	3729.6
190	2348.8	2406.1	2107.6
191	3607.1	3297.0	3151.1
192	6123.6	4687.3	4969.4
193	838.9	1556.9	1384.4
194	1509.9	1207.2	1064.1
195	3187.7	3122.1	2882.5
196	5704.2	4346.0	4793.8
197	2600.5	1848.3	1715.0
198	5284.8	5353.4	5217.4
199	3355.4	3480.1	3161.4

## Normalized table: miss_reads_by_string.

	s1	s2	s3
024_mis_C_A	5903.96	3992.80	2610.96
024_mis_C_G	0.00	682.03	1082.88
024_mis_C_T	1664.86	1370.12	4808.68
025_mis_C_A	5561.19	5097.54	2762.91
025_mis_C_G	251.83	663.02	433.73
025_mis_C_T	1434.02	2753.21	1731.22
026_mis_G_A	1357.07	10871.92	8767.51
026_mis_G_C	503.65	977.67	943.63
026_mis_G_T	8282.33	2713.44	1719.75
027_mis_T_A	27.98	553.23	1394.56
027_mis_T_C	2840.05	1524.85	1641.12
027_mis_T_G	272.81	1645.01	1469.92
028_mis_C_A	2574.24	4027.37	1990.88
028_mis_C_G	97.93	209.19	357.96
028_mis_C_T	1105.24	1490.28	4180.82
029_mis_G_A	930.36	8737.65	5529.10
029_mis_G_C	797.45	398.50	333.79
029_mis_G_T	10891.54	1644.14	1417.91
030_mis_T_A	76.95	44.95	233.04
030_mis_T_C	1203.18	1356.29	1691.08
030_mis_T_G	8890.91	5333.53	4583.42
031_mis_T_A	27.98	439.99	692.57
031_mis_T_C	230.84	405.42	716.33
031_mis_T_G	377.74	91.63	113.86
032_mis_T_A	27.98	101.14	72.90
032_mis_T_C	748.49	356.14	422.26
032_mis_T_G	132.91	59.65	38.50
033_mis_T_A	258.82	167.70	1266.37
033_mis_T_C	482.67	730.44	692.98
033_mis_T_G	0.00	43.22	116.32
034_mis_A_C	2231.47	934.45	844.52
034_mis_A_G	1944.67	2498.20	5248.96
034_mis_A_T	1531.95	1481.63	1278.66
035_mis_C_A	3098.88	3078.23	1877.03
035_mis_C_G	0.00	0.00	256.39
035_mis_C_T	853.42	4352.40	8215.42
036_mis_A_C	1371.06	3733.47	4621.51
036_mis_A_G	825.43	2506.84	2584.34
036_mis_A_T	20.99	309.47	457.89
037_mis_A_C	4469.94	2444.61	1946.24
037_mis_A_G	3448.64	2579.46	6311.77
037_mis_A_T	34.98	325.03	289.97
038_mis_C_A	5757.06	4001.44	3070.90
038_mis_C_G	216.85	140.04	399.32
038_mis_C_T	1133.22	2544.01	4790.25
039_mis_G_A	1685.85	7852.47	4182.05
039_mis_G_C	454.69	2330.50	2170.68
039_mis_G_T	6533.52	2276.91	1980.65
040_mis_T_A	97.93	99.41	551.68
040_mis_T_C	2343.39	1377.04	1501.46
040_mis_T_G	181.88	1849.88	1507.60
041_mis_C_A	5666.12	2638.24	2911.17
041_mis_C_G	125.91	89.90	710.59
041_mis_C_T	272.81	849.73	2119.08
042_mis_G_A	1839.74	7077.08	3734.39
042_mis_G_C	342.77	842.82	1145.55
042_mis_G_T	5820.01	1870.62	793.73
043_mis_T_A	132.91	584.35	909.64
043_mis_T_C	370.75	962.11	714.28
043_mis_T_G	2854.05	3105.03	2839.09
044_mis_G_A	545.63	4871.06	3833.51
044_mis_G_C	48.97	115.83	204.78
044_mis_G_T	13857.51	3667.77	1892.18
045_mis_A_C	3420.66	1899.15	1976.55
045_mis_A_G	160.89	3111.94	10156.75
045_mis_A_T	153.89	542.86	284.24
046_mis_C_A	2462.31	4306.59	1989.66
046_mis_C_G	55.96	1008.79	1798.39
046_mis_C_T	776.47	5821.93	13928.41
047_mis_T_A	461.68	2394.47	1720.57
047_mis_T_C	1462.00	3288.29	3463.67
047_mis_T_G	3938.30	1189.45	1105.82
048_mis_G_A	720.51	6493.59	5756.41
048_mis_G_C	0.00	34.58	26.62
048_mis_G_T	7386.94	2293.33	1355.65
049_mis_G_A	1245.15	10777.70	5732.24
049_mis_G_C	545.63	332.81	178.57
049_mis_G_T	9128.75	2121.31	1720.57
050_mis_G_A	2700.15	9799.17	19715.94
050_mis_G_C	328.77	264.52	130.24
050_mis_G_T	3434.65	542.00	629.91
051_mis_A_C	349.76	369.98	370.65
051_mis_A_G	3679.48	8416.95	11595.54
051_mis_A_T	146.90	183.26	123.69
052_mis_A_C	314.78	248.09	589.77
052_mis_A_G	139.90	5359.46	11568.92
052_mis_A_T	0.00	290.45	210.92
053_mis_A_C	601.59	506.56	889.16
053_mis_A_G	125.91	6832.45	11613.56
053_mis_A_T	76.95	42.36	457.48
054_mis_A_C	19047.95	6475.44	2387.34
054_mis_A_G	104.93	5960.24	9034.14
054_mis_A_T	0.00	10.37	368.20
055_mis_C_A	5722.08	8247.52	5052.37
055_mis_C_G	0.00	761.56	398.91
055_mis_C_T	993.32	1614.75	4457.68
056_mis_C_A	9387.57	3849.30	2876.36
056_mis_C_G	734.50	299.96	403.83
056_mis_C_T	272.81	1871.49	2058.87
057_mis_C_A	9128.75	5924.80	3043.87
057_mis_C_G	0.00	221.29	511.13
057_mis_C_T	11744.95	3355.71	1826.65
058_mis_T_A	132.91	1552.51	1316.74
058_mis_T_C	4295.06	3531.19	2608.91
058_mis_T_G	755.48	394.18	394.41
059_mis_G_A	8394.25	8274.31	3770.44
059_mis_G_C	167.88	209.19	167.51
059_mis_G_T	11549.09	3495.75	2367.27
060_mis_G_A	104.93	6735.63	2515.94
060_mis_G_C	1979.64	1187.73	982.95
060_mis_G_T	22874.33	4808.82	3015.61
061_mis_C_A	8485.19	5082.84	2231.71
061_mis_C_G	377.74	841.09	1408.08
061_mis_C_T	265.82	2586.37	6732.80
062_mis_G_A	1287.12	7791.10	3537.80
062_mis_G_C	48.97	632.76	664.72
062_mis_G_T	7212.06	2136.00	1360.98
063_mis_T_A	20.99	376.03	681.10
063_mis_T_C	230.84	575.71	824.45
063_mis_T_G	755.48	3999.71	3341.21
064_mis_T_A	223.85	1230.95	788.41
064_mis_T_C	496.66	926.67	961.24
064_mis_T_G	41.97	24.20	119.18
065_mis_A_C	3161.83	1339.87	1503.51
065_mis_A_G	132.91	4665.32	7807.50
065_mis_A_T	944.35	2205.16	2617.11
066_mis_C_A	755.48	2746.29	1942.97
066_mis_C_G	0.00	619.80	1140.22
066_mis_C_T	1685.85	7052.01	15757.93
067_mis_C_A	2476.30	3747.30	2243.18
067_mis_C_G	0.00	299.96	208.06
067_mis_C_T	1475.99	2478.32	2992.68
068_mis_C_A	10226.99	5078.52	2967.69
068_mis_C_G	0.00	405.42	504.99
068_mis_C_T	1280.12	1388.27	1551.83
069_mis_A_C	482.67	650.05	343.21
069_mis_A_G	867.41	866.16	1048.89
069_mis_A_T	0.00	853.19	729.43
070_mis_A_C	853.42	229.07	432.09
070_mis_A_G	426.71	2865.58	5902.21
070_mis_A_T	111.92	247.23	192.09
071_mis_C_A	2266.45	2028.81	1629.65
071_mis_C_G	0.00	714.02	702.81
071_mis_C_T	1273.13	3377.32	6581.67
072_mis_T_A	0.00	152.14	353.04
072_mis_T_C	195.87	146.95	673.32
072_mis_T_G	181.88	42.36	56.11
073_mis_T_A	69.95	723.53	305.53
073_mis_T_C	125.91	344.91	443.15
073_mis_T_G	0.00	65.70	139.66
074_mis_A_C	139.90	920.62	303.49
074_mis_A_G	111.92	2871.63	4064.50
074_mis_A_T	216.85	388.99	652.43
075_mis_A_C	125.91	389.86	759.74
075_mis_A_G	41.97	4119.87	8271.94
075_mis_A_T	20.99	491.86	269.90
076_mis_T_A	405.72	2334.82	1322.48
076_mis_T_C	258.82	868.75	1366.71
076_mis_T_G	0.00	68.29	120.00
077_mis_C_A	6911.27	5028.38	3405.11
077_mis_C_G	41.97	273.16	351.00
077_mis_C_T	1350.08	973.35	2943.53
078_mis_G_A	503.65	5468.38	3093.43
078_mis_G_C	97.93	69.15	135.57
078_mis_G_T	17222.20	3420.55	2699.84
079_mis_C_A	7743.70	3390.29	1548.97
079_mis_C_G	0.00	407.15	910.46
079_mis_C_T	321.78	2839.65	5579.06
080_mis_C_A	4155.15	2076.36	1630.47
080_mis_C_G	97.93	29.39	127.78
080_mis_C_T	643.56	1803.20	2967.28
081_mis_T_A	188.87	335.40	619.67
081_mis_T_C	314.78	282.67	587.31
081_mis_T_G	0.00	109.78	238.37
082_mis_T_A	48.97	1073.62	1121.38
082_mis_T_C	97.93	682.03	617.62
082_mis_T_G	55.96	89.90	64.71
083_mis_G_A	496.66	4813.14	2350.07
083_mis_G_C	223.85	85.58	70.04
083_mis_G_T	12500.44	2208.62	1793.07
084_mis_C_A	9030.81	2568.22	1580.09
084_mis_C_G	104.93	136.58	467.72
084_mis_C_T	1049.28	3749.03	8084.36
085_mis_A_C	0.00	146.09	437.41
085_mis_A_G	664.54	994.96	2230.07
085_mis_A_T	0.00	670.80	469.36
086_mis_G_A	5211.43	7054.61	4205.80
086_mis_G_C	314.78	129.66	204.37
086_mis_G_T	8205.38	1725.40	1459.27
087_mis_C_A	10143.05	6022.48	3196.64
087_mis_C_G	62.96	1391.73	1493.68
087_mis_C_T	454.69	1688.23	7529.40
088_mis_A_C	300.79	374.30	373.93
088_mis_A_G	279.81	1926.81	2243.18
088_mis_A_T	230.84	467.66	497.21
089_mis_C_A	1468.99	3569.23	2764.96
089_mis_C_G	0.00	818.61	797.83
089_mis_C_T	1042.29	4737.07	6652.12
090_mis_A_C	202.86	574.85	821.17
090_mis_A_G	258.82	1696.01	3811.39
090_mis_A_T	125.91	165.11	766.70
091_mis_T_A	104.93	2734.19	1206.16
091_mis_T_C	524.64	605.96	1063.22
091_mis_T_G	48.97	42.36	63.48
092_mis_C_A	4581.86	2747.16	1421.18
092_mis_C_G	0.00	411.47	319.05
092_mis_C_T	1063.27	1465.21	2631.03
093_mis_C_A	5554.20	5037.03	4465.05
093_mis_C_G	174.88	879.99	439.46
093_mis_C_T	769.47	1399.51	1869.24
094_mis_C_A	10003.15	7900.88	2529.46
094_mis_C_G	62.96	172.89	375.16
094_mis_C_T	489.66	918.02	2161.26
095_mis_C_A	11640.03	5349.95	2756.77
095_mis_C_G	0.00	256.74	317.41
095_mis_C_T	440.70	606.83	835.51
096_mis_C_A	8883.91	5569.52	1967.54
096_mis_C_G	0.00	83.85	82.73
096_mis_C_T	972.33	1643.28	2304.61
097_mis_T_A	62.96	908.51	1123.43
097_mis_T_C	503.65	802.19	136.79
097_mis_T_G	0.00	267.97	92.15
098_mis_T_A	139.90	879.12	851.89
098_mis_T_C	146.90	388.13	553.73
098_mis_T_G	160.89	36.31	55.70
099_mis_T_A	20.99	101.14	106.90
099_mis_T_C	384.74	582.63	276.45
099_mis_T_G	55.96	25.07	24.57
100_mis_C_A	6428.60	3292.61	1577.23
100_mis_C_G	90.94	19.02	40.55
100_mis_C_T	1755.80	18115.84	12795.15
101_mis_G_A	1175.19	4931.57	2557.72
101_mis_G_C	419.71	149.55	140.07
101_mis_G_T	8023.50	2458.44	1097.63
102_mis_C_A	8681.05	2597.61	1204.52
102_mis_C_G	90.94	112.38	53.65
102_mis_C_T	1762.79	1705.52	3884.70
103_mis_C_A	3966.28	2588.96	1248.35
103_mis_C_G	0.00	81.26	124.10
103_mis_C_T	1070.27	1090.05	1357.29
104_mis_A_C	104.93	439.13	191.68
104_mis_A_G	237.84	765.02	1365.07
104_mis_A_T	104.93	529.03	744.99
105_mis_G_A	454.69	5174.47	3275.68
105_mis_G_C	111.92	14.70	19.25
105_mis_G_T	12766.26	3237.29	2576.56
106_mis_C_A	5659.12	5846.13	2945.99
106_mis_C_G	0.00	700.19	973.53
106_mis_C_T	1496.97	2011.53	5313.67
107_mis_T_A	76.95	2544.88	1244.66
107_mis_T_C	279.81	177.21	237.14
107_mis_T_G	244.83	432.21	531.20
108_mis_G_A	538.63	4687.80	2123.17
108_mis_G_C	195.87	162.51	26.21
108_mis_G_T	7065.16	1647.60	1055.03
109_mis_G_A	468.68	3884.74	2913.63
109_mis_G_C	62.96	158.19	37.68
109_mis_G_T	9464.52	3140.47	1784.06
110_mis_C_A	8667.06	4495.03	2326.32
110_mis_C_G	1427.02	844.55	673.32
110_mis_C_T	3049.91	3271.00	8026.20
111_mis_G_A	5987.90	7335.54	2878.82
111_mis_G_C	55.96	161.65	90.92
111_mis_G_T	10583.75	2178.36	1336.81
112_mis_T_A	195.87	1010.52	894.89
112_mis_T_C	1727.82	1058.06	874.42
112_mis_T_G	2819.07	2513.76	2455.33
113_mis_A_C	0.00	95.09	429.63
113_mis_A_G	181.88	2742.83	5305.48
113_mis_A_T	20.99	662.15	688.88
114_mis_A_C	104.93	707.97	927.25
114_mis_A_G	167.88	5087.16	10820.65
114_mis_A_T	265.82	580.90	835.92
115_mis_T_A	622.57	3369.54	1710.74
115_mis_T_C	146.90	551.51	1714.43
115_mis_T_G	1105.24	1273.30	1161.93
116_mis_A_C	496.66	701.05	670.04
116_mis_A_G	1951.66	3212.22	4949.57
116_mis_A_T	328.77	108.05	834.69
117_mis_G_A	111.92	4580.61	2674.45
117_mis_G_C	181.88	172.02	122.46
117_mis_G_T	8457.21	3570.96	1426.10
118_mis_C_A	8170.40	5286.85	3013.15
118_mis_C_G	384.74	1163.52	1486.30
118_mis_C_T	923.37	2320.13	5377.56
119_mis_G_A	965.34	5861.69	2574.51
119_mis_G_C	41.97	298.23	92.97
119_mis_G_T	6995.21	2280.36	1021.86
120_mis_A_C	328.77	223.89	376.80
120_mis_A_G	223.85	2684.92	4576.45
120_mis_A_T	76.95	163.38	98.30
121_mis_A_C	636.56	578.30	813.39
121_mis_A_G	461.68	5668.06	10273.06
121_mis_A_T	0.00	101.14	334.61
122_mis_G_A	1650.87	4317.82	3555.41
122_mis_G_C	34.98	54.46	39.73
122_mis_G_T	538.63	95.95	394.82
123_mis_A_C	251.83	64.83	292.84
123_mis_A_G	727.50	4782.89	9592.78
123_mis_A_T	20.99	82.12	48.33
124_mis_G_A	258.82	4400.81	2735.06
124_mis_G_C	0.00	32.85	23.75
124_mis_G_T	4945.61	1502.38	1192.24
125_mis_G_A	1154.21	5393.17	2280.45
125_mis_G_C	62.96	90.77	63.07
125_mis_G_T	17278.16	3435.24	2522.50
126_mis_C_A	17865.76	4601.36	2532.74
126_mis_C_G	559.62	2473.13	2583.93
126_mis_C_T	3238.78	2706.53	5546.71
127_mis_C_A	7477.88	3668.64	2251.37
127_mis_C_G	363.75	625.85	455.02
127_mis_C_T	2252.46	763.29	1286.44
128_mis_C_A	10730.65	7060.66	3560.74
128_mis_C_G	1084.26	806.51	908.00
128_mis_C_T	2462.31	1153.15	1603.03
129_mis_G_A	7526.84	8868.18	3899.04
129_mis_G_C	244.83	186.72	124.51
129_mis_G_T	10702.67	2684.05	1831.56
130_mis_C_A	8716.03	7393.46	4492.08
130_mis_C_G	538.63	776.26	1559.21
130_mis_C_T	216.85	2717.76	4733.73
131_mis_A_C	2056.59	2397.06	2403.31
131_mis_A_G	1266.13	2247.52	3128.65
131_mis_A_T	496.66	251.55	606.15
132_mis_C_A	4211.12	1789.37	1988.02
132_mis_C_G	55.96	722.66	1301.59
132_mis_C_T	986.32	4287.57	6871.24
133_mis_C_A	8988.84	3471.55	2410.28
133_mis_C_G	237.84	184.12	442.33
133_mis_C_T	1301.11	1311.34	2213.28
134_mis_G_A	1622.89	6308.60	2235.80
134_mis_G_C	118.92	77.80	101.98
134_mis_G_T	3693.47	1090.05	430.86
135_mis_A_C	685.53	387.26	657.35
135_mis_A_G	643.56	2096.24	3960.47
135_mis_A_T	132.91	555.83	187.58
136_mis_T_A	139.90	729.58	1113.19
136_mis_T_C	461.68	663.02	849.84
136_mis_T_G	482.67	429.62	371.88
137_mis_C_A	3931.31	3688.52	1848.77
137_mis_C_G	363.75	348.36	450.52
137_mis_C_T	615.58	1060.65	2309.52
138_mis_G_A	1224.16	3611.58	2456.97
138_mis_G_C	160.89	246.36	257.21
138_mis_G_T	11038.44	2961.53	1442.89
139_mis_C_A	5225.42	3228.64	1972.04
139_mis_C_G	251.83	663.88	1086.98
139_mis_C_T	503.65	3421.41	6168.83
140_mis_C_A	3000.94	2210.34	2582.70
140_mis_C_G	790.46	587.81	686.43
140_mis_C_T	692.53	1238.73	2043.31
141_mis_C_A	6421.60	3441.29	2064.20
141_mis_C_G	181.88	389.86	138.43
141_mis_C_T	720.51	1234.40	2287.00
142_mis_T_A	510.65	245.50	751.96
142_mis_T_C	503.65	843.68	728.20
142_mis_T_G	2056.59	1562.89	1290.12
143_mis_T_A	356.76	1280.22	954.28
143_mis_T_C	405.72	321.57	505.40
143_mis_T_G	2364.38	2496.47	2334.51
144_mis_C_A	4169.14	3729.15	1941.33
144_mis_C_G	216.85	329.35	501.30
144_mis_C_T	587.60	1195.51	3499.30
145_mis_C_A	5323.35	4082.70	1801.67
145_mis_C_G	293.80	216.97	267.44
145_mis_C_T	90.94	1386.54	2372.19
146_mis_C_A	10240.98	5374.16	3995.69
146_mis_C_G	20.99	54.46	239.18
146_mis_C_T	664.54	598.18	1341.32
147_mis_A_C	188.87	115.83	149.49
147_mis_A_G	293.80	907.65	1401.52
147_mis_A_T	0.00	112.38	655.30
148_mis_A_C	265.82	300.82	290.79
148_mis_A_G	363.75	2289.01	4244.30
148_mis_A_T	188.87	217.84	218.30
149_mis_C_A	3371.69	3693.71	2592.94
149_mis_C_G	251.83	126.21	187.99
149_mis_C_T	1238.15	3671.23	6352.73
150_mis_A_C	517.65	367.38	743.36
150_mis_A_G	384.74	2040.92	2382.84
150_mis_A_T	174.88	486.67	384.58
151_mis_G_A	328.77	5515.06	2621.20
151_mis_G_C	20.99	51.00	19.25
151_mis_G_T	7939.56	2088.46	1290.94
152_mis_T_A	216.85	2290.74	1684.94
152_mis_T_C	419.71	516.93	792.50
152_mis_T_G	734.50	637.95	992.78
153_mis_T_A	62.96	976.80	923.56
153_mis_T_C	916.37	344.04	532.43
153_mis_T_G	2112.55	2026.22	2024.47
154_mis_G_A	664.54	4650.63	2395.53
154_mis_G_C	55.96	51.00	73.31
154_mis_G_T	6904.27	1637.23	798.65
155_mis_C_A	5799.03	3900.30	2645.78
155_mis_C_G	384.74	1123.76	1335.99
155_mis_C_T	2504.28	3529.46	4355.70
156_mis_G_A	2770.10	6883.45	3366.61
156_mis_G_C	62.96	146.95	133.11
156_mis_G_T	9065.79	1765.16	1806.58
157_mis_C_A	7785.67	6208.33	3121.69
157_mis_C_G	167.88	1053.74	1797.57
157_mis_C_T	594.59	1223.17	5555.31
158_mis_A_C	398.73	455.55	692.16
158_mis_A_G	1371.06	2730.73	3072.54
158_mis_A_T	510.65	817.75	842.88
159_mis_G_A	174.88	4408.59	2477.45
159_mis_G_C	27.98	69.15	77.82
159_mis_G_T	9072.79	2003.75	2199.35
160_mis_C_A	5267.39	3730.01	2877.18
160_mis_C_G	475.67	686.36	1366.30
160_mis_C_T	888.39	2410.89	6447.75
161_mis_C_A	5421.29	2298.52	2221.06
161_mis_C_G	83.94	73.48	205.60
161_mis_C_T	426.71	1504.97	2133.00
162_mis_T_A	594.59	1769.49	1167.66
162_mis_T_C	3455.63	1262.93	733.12
162_mis_T_G	1916.69	1164.39	907.59
163_mis_G_A	538.63	5462.33	2514.31
163_mis_G_C	0.00	82.12	109.76
163_mis_G_T	6400.62	2614.90	1102.95
164_mis_A_C	0.00	126.21	444.38
164_mis_A_G	209.86	2278.63	4613.72
164_mis_A_T	223.85	143.50	267.03
165_mis_A_C	76.95	290.45	439.46
165_mis_A_G	279.81	4185.57	11062.29
165_mis_A_T	27.98	328.48	185.12
166_mis_T_A	412.72	2378.91	1260.22
166_mis_T_C	314.78	642.27	843.70
166_mis_T_G	1748.80	1663.16	1614.91
167_mis_G_A	1133.22	4545.17	2965.64
167_mis_G_C	0.00	62.24	88.06
167_mis_G_T	8233.36	1806.66	918.24
168_mis_G_A	1224.16	5907.51	3236.77
168_mis_G_C	62.96	31.12	111.40
168_mis_G_T	9205.69	2323.59	1297.09
169_mis_C_A	6722.40	4919.47	2214.10
169_mis_C_G	433.70	647.46	545.13
169_mis_C_T	1615.89	2328.77	5051.55
170_mis_G_A	706.52	6000.87	3130.70
170_mis_G_C	552.62	46.68	87.65
170_mis_G_T	4106.19	1557.70	894.08
171_mis_A_C	783.46	670.80	680.28
171_mis_A_G	230.84	3079.10	4621.10
171_mis_A_T	174.88	247.23	242.87
172_mis_A_C	76.95	280.94	1231.56
172_mis_A_G	377.74	6774.53	13171.54
172_mis_A_T	167.88	245.50	480.83
173_mis_T_A	391.73	2824.09	980.08
173_mis_T_C	20.99	907.65	1339.68
173_mis_T_G	587.60	657.83	792.91
174_mis_G_A	356.76	5760.55	3172.47
174_mis_G_C	0.00	63.10	88.88
174_mis_G_T	6260.71	1447.92	869.50
175_mis_G_A	972.33	5941.22	3302.71
175_mis_G_C	139.90	52.73	28.67
175_mis_G_T	9254.66	4141.48	1764.40
176_mis_C_A	10394.88	5501.23	2995.54
176_mis_C_G	587.60	841.95	1505.14
176_mis_C_T	4448.95	2477.45	4424.10
177_mis_G_A	1441.01	6838.50	2333.69
177_mis_G_C	104.93	354.42	34.40
177_mis_G_T	10436.85	2891.51	1232.78
178_mis_C_A	5917.95	3136.15	2184.20
178_mis_C_G	181.88	279.21	674.55
178_mis_C_T	160.89	4110.36	5624.94
179_mis_T_A	321.78	284.40	394.00
179_mis_T_C	209.86	391.59	226.90
179_mis_T_G	706.52	921.48	717.55
180_mis_A_C	202.86	194.50	487.79
180_mis_A_G	195.87	361.33	882.20
180_mis_A_T	125.91	125.34	280.55
181_mis_A_C	384.74	336.26	328.47
181_mis_A_G	48.97	660.42	2409.05
181_mis_A_T	55.96	135.72	249.01
182_mis_T_A	265.82	251.55	315.36
182_mis_T_C	55.96	297.36	530.79
182_mis_T_G	419.71	380.35	363.28
183_mis_A_C	398.73	212.65	384.17
183_mis_A_G	230.84	370.84	619.67
183_mis_A_T	69.95	60.51	135.16
184_mis_A_C	104.93	396.77	460.76
184_mis_A_G	111.92	278.35	1363.43
184_mis_A_T	132.91	104.60	101.16
185_mis_G_A	370.75	372.57	1285.21
185_mis_G_C	132.91	83.85	38.50
185_mis_G_T	552.62	335.40	581.58
186_mis_A_C	244.83	172.89	383.76
186_mis_A_G	230.84	499.64	1874.98
186_mis_A_T	195.87	160.78	286.28
187_mis_T_A	251.83	399.37	495.57
187_mis_T_C	174.88	242.90	571.75
187_mis_T_G	615.58	416.65	399.73
188_mis_A_C	510.65	318.97	387.45
188_mis_A_G	181.88	427.89	1674.29
188_mis_A_T	216.85	114.97	271.95
189_mis_T_A	258.82	311.19	514.41
189_mis_T_C	139.90	220.43	266.22
189_mis_T_G	419.71	519.52	351.00
190_mis_C_A	363.75	787.49	821.17
190_mis_C_G	0.00	42.36	81.91
190_mis_C_T	195.87	82.99	337.07
191_mis_A_C	272.81	395.91	383.76
191_mis_A_G	363.75	197.09	695.44
191_mis_A_T	118.92	244.63	194.54
192_mis_T_A	160.89	241.18	334.61
192_mis_T_C	230.84	390.72	382.94
192_mis_T_G	811.44	478.03	568.06
193_mis_C_A	209.86	616.34	417.75
193_mis_C_G	27.98	95.09	72.49
193_mis_C_T	0.00	306.01	680.28
194_mis_G_A	146.90	453.83	549.22
194_mis_G_C	90.94	76.07	65.94
194_mis_G_T	125.91	161.65	124.51
195_mis_G_A	405.72	1197.23	959.61
195_mis_G_C	216.85	172.89	88.06
195_mis_G_T	657.55	663.02	833.05
196_mis_C_A	41.97	370.84	578.71
196_mis_C_G	237.84	255.87	477.14
196_mis_C_T	153.89	582.63	2262.02
197_mis_T_A	125.91	64.83	226.08
197_mis_T_C	97.93	124.48	137.20
197_mis_T_G	314.78	344.91	244.10
198_mis_T_A	97.93	170.29	343.21
198_mis_T_C	293.80	191.90	578.30
198_mis_T_G	1210.17	870.48	1225.82
199_mis_T_A	34.98	550.64	579.53
199_mis_T_C	370.75	537.67	704.04
199_mis_T_G	454.69	335.40	455.84

## Normalized table: miss_indexes_by_string.

	s1	s2	s3
024_mis_C_A	5610.75	4224.380	2388.55
024_mis_C_G	0.00	787.851	1124.93
024_mis_C_T	1429.49	1470.654	4465.04
025_mis_C_A	5932.39	5064.754	2619.70
025_mis_C_G	285.90	780.347	473.86
025_mis_C_T	1608.18	2468.599	1906.99
026_mis_G_A	1429.49	10617.225	8340.65
026_mis_G_C	786.22	1298.078	1356.08
026_mis_G_T	8827.10	2648.679	1594.93
027_mis_T_A	35.74	697.811	1236.65
027_mis_T_C	3502.25	1733.271	1783.71
027_mis_T_G	321.64	1988.385	1910.84
028_mis_C_A	2501.61	3999.280	2111.17
028_mis_C_G	107.21	247.610	404.51
028_mis_C_T	1536.70	1635.728	4214.63
029_mis_G_A	786.22	8853.940	5250.95
029_mis_G_C	857.69	472.710	408.36
029_mis_G_T	10363.81	1838.318	1548.70
030_mis_T_A	107.21	67.530	250.41
030_mis_T_C	1143.59	1343.098	1467.80
030_mis_T_G	9863.48	5860.108	5397.35
031_mis_T_A	35.74	255.113	481.56
031_mis_T_C	321.64	480.214	720.42
031_mis_T_G	500.32	105.047	134.84
032_mis_T_A	35.74	135.060	77.05
032_mis_T_C	786.22	322.644	570.17
032_mis_T_G	178.69	75.033	42.38
033_mis_T_A	357.37	195.087	1117.22
033_mis_T_C	679.01	682.804	739.68
033_mis_T_G	0.00	52.523	104.02
034_mis_A_C	2358.66	997.944	893.78
034_mis_A_G	2215.71	2536.129	5123.82
034_mis_A_T	2251.45	2453.592	1660.43
035_mis_C_A	3573.73	3203.926	2068.79
035_mis_C_G	0.00	0.000	269.67
035_mis_C_T	1000.64	4314.420	8086.39
036_mis_A_C	1500.96	4584.540	5817.27
036_mis_A_G	964.91	2348.545	2457.89
036_mis_A_T	35.74	337.650	454.59
037_mis_A_C	4467.16	2521.122	2134.28
037_mis_A_G	3502.25	3001.336	6387.44
037_mis_A_T	35.74	315.140	285.08
038_mis_C_A	4645.84	3864.220	3058.88
038_mis_C_G	250.16	165.073	323.61
038_mis_C_T	1179.33	2626.169	4746.27
039_mis_G_A	1786.86	7375.782	3894.87
039_mis_G_C	750.48	2918.799	2870.11
039_mis_G_T	7075.98	2408.572	1914.69
040_mis_T_A	107.21	157.570	550.91
040_mis_T_C	2823.24	1643.231	1533.29
040_mis_T_G	214.42	2311.028	1914.69
041_mis_C_A	5896.65	2821.256	2831.58
041_mis_C_G	142.95	90.040	639.51
041_mis_C_T	321.64	877.891	2199.78
042_mis_G_A	1608.18	6632.952	3517.33
042_mis_G_C	393.11	1117.997	1483.21
042_mis_G_T	6897.29	1950.868	943.86
043_mis_T_A	142.95	525.234	824.43
043_mis_T_C	393.11	960.427	816.73
043_mis_T_G	3216.35	3856.716	3563.56
044_mis_G_A	643.27	4974.714	3798.56
044_mis_G_C	35.74	112.550	177.21
044_mis_G_T	11686.08	3218.932	1991.74
045_mis_A_C	3859.62	2003.391	2068.79
045_mis_A_G	250.16	3391.509	9519.52
045_mis_A_T	214.42	487.717	273.53
046_mis_C_A	2179.97	4254.393	2246.01
046_mis_C_G	71.47	997.944	1460.10
046_mis_C_T	857.69	5289.854	12512.91
047_mis_T_A	428.85	2363.552	1537.15
047_mis_T_C	1643.91	4134.340	4391.85
047_mis_T_G	4145.52	1290.574	1190.42
048_mis_G_A	857.69	6452.872	4938.90
048_mis_G_C	0.00	60.027	34.67
048_mis_G_T	7647.77	2558.639	1552.56
049_mis_G_A	1072.12	10069.481	5320.30
049_mis_G_C	571.80	307.637	181.07
049_mis_G_T	8505.47	2130.948	1664.28
050_mis_G_A	2608.82	10061.978	18857.97
050_mis_G_C	285.90	262.617	150.25
050_mis_G_T	3966.84	697.811	728.12
051_mis_A_C	357.37	412.684	412.22
051_mis_A_G	4002.57	8868.947	11276.25
051_mis_A_T	178.69	195.087	169.51
052_mis_A_C	393.11	345.154	566.32
052_mis_A_G	178.69	4847.157	10763.87
052_mis_A_T	0.00	217.597	211.89
053_mis_A_C	679.01	510.227	920.75
053_mis_A_G	178.69	6295.301	10879.45
053_mis_A_T	35.74	75.033	481.56
054_mis_A_C	17975.84	6070.201	2650.52
054_mis_A_G	142.95	5357.384	8317.54
054_mis_A_T	0.00	15.007	327.46
055_mis_C_A	5789.44	8996.503	6206.37
055_mis_C_G	0.00	630.280	416.07
055_mis_C_T	1107.86	1643.231	4522.83
056_mis_C_A	8755.63	3766.676	2623.55
056_mis_C_G	500.32	247.610	392.95
056_mis_C_T	321.64	1515.675	2045.68
057_mis_C_A	9756.27	5604.994	3105.11
057_mis_C_G	0.00	187.583	354.43
057_mis_C_T	11614.61	3286.463	1776.00
058_mis_T_A	214.42	1583.205	1186.57
058_mis_T_C	4860.27	5214.821	3813.97
058_mis_T_G	821.96	442.697	431.48
059_mis_G_A	7826.46	7158.185	3648.31
059_mis_G_C	250.16	300.134	204.18
059_mis_G_T	10578.23	3534.073	2592.73
060_mis_G_A	178.69	5792.578	2534.94
060_mis_G_C	2215.71	1313.084	1082.55
060_mis_G_T	22764.63	4464.487	2951.01
061_mis_C_A	8255.31	4937.197	2442.48
061_mis_C_G	500.32	1042.964	1413.87
061_mis_C_T	321.64	2521.122	6549.24
062_mis_G_A	1429.49	7053.139	3255.36
062_mis_G_C	71.47	780.347	820.58
062_mis_G_T	7469.09	2183.472	1425.42
063_mis_T_A	35.74	285.127	600.99
063_mis_T_C	321.64	645.287	905.34
063_mis_T_G	929.17	5237.331	4515.12
064_mis_T_A	285.90	1320.588	855.25
064_mis_T_C	536.06	855.381	936.16
064_mis_T_G	35.74	22.510	127.13
065_mis_A_C	3680.94	1635.728	1660.43
065_mis_A_G	142.95	3834.206	7362.12
065_mis_A_T	1286.54	2633.672	2866.26
066_mis_C_A	964.91	2986.329	2138.14
066_mis_C_G	0.00	540.240	1101.81
066_mis_C_T	1608.18	7105.662	14839.81
067_mis_C_A	2465.87	3466.543	2126.58
067_mis_C_G	0.00	352.657	208.03
067_mis_C_T	1751.13	2423.579	2873.96
068_mis_C_A	9113.00	4486.997	2885.52
068_mis_C_G	0.00	315.140	458.45
068_mis_C_T	1536.70	1080.481	1379.19
069_mis_A_C	428.85	630.280	362.13
069_mis_A_G	714.75	967.931	1151.90
069_mis_A_T	0.00	817.864	666.48
070_mis_A_C	679.01	255.113	489.27
070_mis_A_G	500.32	3053.859	5747.92
070_mis_A_T	107.21	300.134	277.38
071_mis_C_A	2716.03	2085.928	1633.46
071_mis_C_G	0.00	592.764	778.20
071_mis_C_T	1000.64	3338.986	6476.05
072_mis_T_A	0.00	142.563	354.43
072_mis_T_C	214.42	232.603	647.22
072_mis_T_G	285.90	60.027	77.05
073_mis_T_A	71.47	600.267	323.61
073_mis_T_C	178.69	330.147	431.48
073_mis_T_G	0.00	75.033	146.39
074_mis_A_C	107.21	720.321	335.17
074_mis_A_G	142.95	2423.579	4045.12
074_mis_A_T	250.16	382.670	681.89
075_mis_A_C	71.47	465.207	708.86
075_mis_A_G	71.47	3999.280	7778.19
075_mis_A_T	35.74	465.207	261.97
076_mis_T_A	428.85	2138.452	1232.80
076_mis_T_C	250.16	840.374	1402.31
076_mis_T_G	0.00	97.543	154.10
077_mis_C_A	6218.28	4637.064	3305.44
077_mis_C_G	71.47	300.134	396.81
077_mis_C_T	1393.75	1185.528	3020.36
078_mis_G_A	607.53	5132.284	2985.68
078_mis_G_C	142.95	97.543	177.21
078_mis_G_T	16224.72	3248.946	2430.92
079_mis_C_A	8112.36	3196.422	1525.59
079_mis_C_G	0.00	435.194	940.01
079_mis_C_T	428.85	2401.068	4908.08
080_mis_C_A	3859.62	2033.405	1444.69
080_mis_C_G	142.95	30.013	111.72
080_mis_C_T	679.01	1710.761	2750.68
081_mis_T_A	178.69	412.684	735.83
081_mis_T_C	393.11	300.134	581.73
081_mis_T_G	0.00	127.557	231.15
082_mis_T_A	71.47	990.441	1159.60
082_mis_T_C	142.95	660.294	639.51
082_mis_T_G	35.74	97.543	80.90
083_mis_G_A	536.06	4652.070	2500.27
083_mis_G_C	321.64	120.053	88.61
083_mis_G_T	12508.04	2258.505	1729.77
084_mis_C_A	7147.45	2281.015	1552.56
084_mis_C_G	71.47	202.590	392.95
084_mis_C_T	1215.07	3781.683	7631.79
085_mis_A_C	0.00	210.094	392.95
085_mis_A_G	893.43	1185.528	2219.04
085_mis_A_T	0.00	622.777	392.95
086_mis_G_A	4288.47	6700.482	3756.18
086_mis_G_C	428.85	165.073	227.30
086_mis_G_T	8648.42	2063.418	1379.19
087_mis_C_A	9005.79	5800.081	3182.16
087_mis_C_G	107.21	1350.601	1483.21
087_mis_C_T	571.80	1695.755	6861.29
088_mis_A_C	321.64	472.710	454.59
088_mis_A_G	393.11	1703.258	2238.30
088_mis_A_T	250.16	337.650	481.56
089_mis_C_A	1536.70	3646.623	2527.24
089_mis_C_G	0.00	817.864	658.78
089_mis_C_T	1143.59	4614.553	6452.93
090_mis_A_C	178.69	607.770	924.60
090_mis_A_G	285.90	1748.278	3840.94
090_mis_A_T	142.95	195.087	758.94
091_mis_T_A	71.47	2341.042	1213.54
091_mis_T_C	571.80	675.301	1101.81
091_mis_T_G	35.74	52.523	77.05
092_mis_C_A	4717.32	2513.619	1386.90
092_mis_C_G	0.00	442.697	319.76
092_mis_C_T	1107.86	1455.648	2461.74
093_mis_C_A	5753.70	4907.184	4137.58
093_mis_C_G	250.16	832.871	454.59
093_mis_C_T	714.75	1283.071	1564.11
094_mis_C_A	10006.43	7083.152	2430.92
094_mis_C_G	107.21	225.100	443.04
094_mis_C_T	500.32	877.891	1914.69
095_mis_C_A	10506.75	5522.458	2592.73
095_mis_C_G	0.00	262.617	373.69
095_mis_C_T	500.32	660.294	916.89
096_mis_C_A	8862.84	5079.761	2149.69
096_mis_C_G	0.00	127.557	154.10
096_mis_C_T	1072.12	1718.265	2323.05
097_mis_T_A	71.47	915.407	1101.81
097_mis_T_C	500.32	645.287	169.51
097_mis_T_G	0.00	247.610	100.16
098_mis_T_A	214.42	937.917	847.55
098_mis_T_C	178.69	495.220	535.50
098_mis_T_G	178.69	45.020	77.05
099_mis_T_A	35.74	112.550	127.13
099_mis_T_C	428.85	585.260	377.54
099_mis_T_G	35.74	37.517	46.23
100_mis_C_A	6396.97	3414.019	1648.87
100_mis_C_G	107.21	37.517	42.38
100_mis_C_T	1822.60	16860.003	12501.35
101_mis_G_A	1429.49	4817.144	2727.57
101_mis_G_C	571.80	180.080	169.51
101_mis_G_T	8326.78	2498.612	1248.21
102_mis_C_A	8398.26	2506.115	1213.54
102_mis_C_G	35.74	90.040	84.75
102_mis_C_T	1822.60	1928.358	4079.79
103_mis_C_A	4038.31	2701.202	1190.42
103_mis_C_G	0.00	105.047	146.39
103_mis_C_T	1286.54	1185.528	1614.20
104_mis_A_C	142.95	390.174	196.48
104_mis_A_G	285.90	720.321	1348.37
104_mis_A_T	178.69	555.247	654.92
105_mis_G_A	607.53	4614.553	3193.72
105_mis_G_C	142.95	7.503	23.11
105_mis_G_T	12257.88	3083.872	2261.41
106_mis_C_A	5324.85	5034.740	2843.14
106_mis_C_G	0.00	487.717	928.45
106_mis_C_T	1500.96	2153.458	5428.17
107_mis_T_A	71.47	2183.472	1244.36
107_mis_T_C	393.11	240.107	315.90
107_mis_T_G	321.64	480.214	543.20
108_mis_G_A	536.06	4291.910	2080.35
108_mis_G_C	214.42	165.073	38.52
108_mis_G_T	7290.40	1838.318	1009.35
109_mis_G_A	464.58	3504.059	2816.17
109_mis_G_C	71.47	150.067	53.93
109_mis_G_T	9255.95	3143.899	1791.41
110_mis_C_A	7969.41	4914.687	2446.33
110_mis_C_G	1465.23	735.327	770.50
110_mis_C_T	3466.51	3293.966	7712.70
111_mis_G_A	5253.38	6587.932	2816.17
111_mis_G_C	71.47	142.563	96.31
111_mis_G_T	10935.60	2326.035	1363.78
112_mis_T_A	250.16	1027.957	970.83
112_mis_T_C	1751.13	870.387	839.84
112_mis_T_G	2930.46	3083.872	2977.98
113_mis_A_C	0.00	127.557	416.07
113_mis_A_G	250.16	3023.846	5331.85
113_mis_A_T	35.74	562.750	681.89
114_mis_A_C	107.21	592.764	1040.17
114_mis_A_G	214.42	5139.787	10440.26
114_mis_A_T	214.42	622.777	812.88
115_mis_T_A	714.75	3353.992	1841.49
115_mis_T_C	214.42	705.314	1583.38
115_mis_T_G	1322.28	1403.124	1448.54
116_mis_A_C	607.53	727.824	797.47
116_mis_A_G	2037.02	3158.906	4842.59
116_mis_A_T	285.90	127.557	654.92
117_mis_G_A	142.95	4697.090	2608.14
117_mis_G_C	142.95	187.583	107.87
117_mis_G_T	8755.63	3143.899	1544.85
118_mis_C_A	8005.15	5184.807	2754.53
118_mis_C_G	393.11	1208.038	1533.29
118_mis_C_T	1000.64	2333.538	5281.77
119_mis_G_A	964.91	5627.504	2450.19
119_mis_G_C	71.47	270.120	119.43
119_mis_G_T	7254.66	2356.048	1024.76
120_mis_A_C	357.37	285.127	454.59
120_mis_A_G	250.16	2851.269	4403.40
120_mis_A_T	107.21	172.577	146.39
121_mis_A_C	500.32	510.227	658.78
121_mis_A_G	536.06	5620.001	10043.46
121_mis_A_T	0.00	135.060	339.02
122_mis_G_A	1179.33	4081.816	3397.90
122_mis_G_C	35.74	67.530	53.93
122_mis_G_T	428.85	135.060	431.48
123_mis_A_C	214.42	75.033	315.90
123_mis_A_G	929.17	4366.943	9014.84
123_mis_A_T	35.74	120.053	80.90
124_mis_G_A	393.11	4569.533	2611.99
124_mis_G_C	0.00	52.523	38.52
124_mis_G_T	5432.06	1620.721	1348.37
125_mis_G_A	1322.28	5064.754	2269.12
125_mis_G_C	107.21	127.557	80.90
125_mis_G_T	16867.99	3729.160	2581.17
126_mis_C_A	15474.23	4539.520	2608.14
126_mis_C_G	607.53	2453.592	2577.32
126_mis_C_T	3037.67	2768.732	5146.93
127_mis_C_A	7612.04	3549.079	2253.71
127_mis_C_G	428.85	562.750	504.68
127_mis_C_T	2144.24	847.877	1317.55
128_mis_C_A	10542.49	6542.912	3274.62
128_mis_C_G	1000.64	907.904	1105.67
128_mis_C_T	2072.76	1253.058	1398.46
129_mis_G_A	7683.51	7683.419	3891.02
129_mis_G_C	321.64	202.590	161.80
129_mis_G_T	11114.29	2596.155	1714.36
130_mis_C_A	8576.94	7038.132	4045.12
130_mis_C_G	536.06	885.394	1552.56
130_mis_C_T	321.64	2626.169	4569.06
131_mis_A_C	2322.92	2828.759	2916.34
131_mis_A_G	1215.07	2258.505	3166.75
131_mis_A_T	428.85	255.113	566.32
132_mis_C_A	3895.36	1710.761	1976.33
132_mis_C_G	71.47	765.341	1236.65
132_mis_C_T	1179.33	3556.583	6564.65
133_mis_C_A	7147.45	3504.059	2269.12
133_mis_C_G	285.90	195.087	523.94
133_mis_C_T	1679.65	1373.111	2180.51
134_mis_G_A	1429.49	6482.885	2249.86
134_mis_G_C	107.21	90.040	127.13
134_mis_G_T	3537.99	1117.997	458.45
135_mis_A_C	714.75	465.207	697.30
135_mis_A_G	679.01	1935.861	3871.76
135_mis_A_T	178.69	592.764	231.15
136_mis_T_A	142.95	750.334	1163.45
136_mis_T_C	571.80	735.327	966.98
136_mis_T_G	536.06	495.220	458.45
137_mis_C_A	3609.46	3586.596	1876.17
137_mis_C_G	393.11	345.154	516.23
137_mis_C_T	679.01	1027.957	2034.12
138_mis_G_A	1286.54	3706.649	2585.02
138_mis_G_C	178.69	292.630	277.38
138_mis_G_T	10756.92	3016.342	1483.21
139_mis_C_A	4788.79	2948.812	2168.95
139_mis_C_G	250.16	727.824	1128.78
139_mis_C_T	571.80	3196.422	5990.63
140_mis_C_A	2680.29	2205.982	2319.20
140_mis_C_G	786.22	525.234	647.22
140_mis_C_T	964.91	1403.124	2049.53
141_mis_C_A	6182.55	3248.946	1960.92
141_mis_C_G	178.69	307.637	157.95
141_mis_C_T	857.69	1358.104	2107.32
142_mis_T_A	464.58	322.644	843.70
142_mis_T_C	500.32	870.387	801.32
142_mis_T_G	2072.76	1823.311	1583.38
143_mis_T_A	321.64	1350.601	978.53
143_mis_T_C	536.06	405.180	624.10
143_mis_T_G	2430.13	2933.805	2816.17
144_mis_C_A	4610.11	3504.059	1872.31
144_mis_C_G	214.42	307.637	535.50
144_mis_C_T	750.48	1305.581	3343.97
145_mis_C_A	4896.00	3661.629	2076.50
145_mis_C_G	321.64	277.623	254.26
145_mis_C_T	142.95	1253.058	2111.17
146_mis_C_A	8576.94	5162.297	4237.75
146_mis_C_G	35.74	67.530	196.48
146_mis_C_T	857.69	615.274	1298.29
147_mis_A_C	178.69	142.563	188.77
147_mis_A_G	321.64	937.917	1417.72
147_mis_A_T	0.00	165.073	543.20
148_mis_A_C	285.90	337.650	346.72
148_mis_A_G	536.06	2243.498	4133.73
148_mis_A_T	214.42	210.094	265.82
149_mis_C_A	3645.20	3811.696	2577.32
149_mis_C_G	250.16	180.080	254.26
149_mis_C_T	821.96	3541.576	5955.96
150_mis_A_C	500.32	412.684	862.96
150_mis_A_G	357.37	1793.298	2523.38
150_mis_A_T	178.69	405.180	381.40
151_mis_G_A	285.90	5499.948	2538.79
151_mis_G_C	35.74	60.027	26.97
151_mis_G_T	8183.83	1950.868	1190.42
152_mis_T_A	250.16	2273.512	1567.97
152_mis_T_C	393.11	637.784	778.20
152_mis_T_G	714.75	780.347	1059.44
153_mis_T_A	107.21	990.441	940.01
153_mis_T_C	1000.64	367.664	643.37
153_mis_T_G	2251.45	2491.108	2496.42
154_mis_G_A	643.27	4426.970	2207.48
154_mis_G_C	71.47	60.027	88.61
154_mis_G_T	7397.61	1620.721	897.63
155_mis_C_A	6146.81	3744.166	2515.68
155_mis_C_G	464.58	1163.017	1344.52
155_mis_C_T	3073.40	3511.563	4418.81
156_mis_G_A	2537.35	6520.402	3455.69
156_mis_G_C	71.47	150.067	173.36
156_mis_G_T	9291.69	2153.458	1664.28
157_mis_C_A	7111.71	6377.838	3078.14
157_mis_C_G	142.95	1163.017	1760.59
157_mis_C_T	750.48	1493.165	4915.78
158_mis_A_C	393.11	540.240	681.89
158_mis_A_G	1286.54	2873.779	3251.51
158_mis_A_T	464.58	780.347	801.32
159_mis_G_A	250.16	4689.587	2754.53
159_mis_G_C	35.74	90.040	107.87
159_mis_G_T	9398.90	2326.035	2353.87
160_mis_C_A	5467.80	4036.796	2492.56
160_mis_C_G	428.85	795.354	1363.78
160_mis_C_T	1215.07	2461.095	6464.49
161_mis_C_A	5110.43	2416.075	2138.14
161_mis_C_G	71.47	97.543	231.15
161_mis_C_T	643.27	1343.098	2053.38
162_mis_T_A	679.01	1815.808	1225.09
162_mis_T_C	3287.83	1440.641	828.29
162_mis_T_G	1858.34	1380.614	1121.08
163_mis_G_A	500.32	5184.807	2585.02
163_mis_G_C	0.00	82.537	111.72
163_mis_G_T	5860.91	2318.532	1067.14
164_mis_A_C	0.00	127.557	446.89
164_mis_A_G	285.90	2416.075	4349.47
164_mis_A_T	250.16	142.563	331.31
165_mis_A_C	35.74	277.623	504.68
165_mis_A_G	357.37	4231.883	10798.55
165_mis_A_T	35.74	375.167	238.85
166_mis_T_A	500.32	2806.249	1506.33
166_mis_T_C	464.58	727.824	820.58
166_mis_T_G	2037.02	1890.841	1883.87
167_mis_G_A	1322.28	4659.574	3178.31
167_mis_G_C	0.00	75.033	88.61
167_mis_G_T	8612.68	2003.391	955.42
168_mis_G_A	1751.13	5792.578	3447.98
168_mis_G_C	107.21	30.013	127.13
168_mis_G_T	9398.90	2416.075	1352.23
169_mis_C_A	6861.55	4667.077	2461.74
169_mis_C_G	500.32	720.321	670.33
169_mis_C_T	1679.65	2258.505	5019.80
170_mis_G_A	750.48	6190.255	3055.03
170_mis_G_C	536.06	52.523	100.16
170_mis_G_T	4359.95	1590.708	970.83
171_mis_A_C	821.96	772.844	793.61
171_mis_A_G	285.90	3001.336	4784.80
171_mis_A_T	214.42	240.107	281.23
172_mis_A_C	71.47	352.657	1078.70
172_mis_A_G	357.37	6617.945	13032.99
172_mis_A_T	250.16	277.623	466.15
173_mis_T_A	464.58	2791.242	1090.26
173_mis_T_C	35.74	855.381	1148.04
173_mis_T_G	571.80	877.891	966.98
174_mis_G_A	393.11	5267.344	3035.77
174_mis_G_C	0.00	60.027	111.72
174_mis_G_T	4931.74	1538.185	905.34
175_mis_G_A	1107.86	5942.645	3132.08
175_mis_G_C	142.95	60.027	42.38
175_mis_G_T	9827.75	4381.950	1887.72
176_mis_C_A	8934.31	5755.061	3004.95
176_mis_C_G	643.27	892.897	1529.44
176_mis_C_T	4788.79	2738.719	4861.85
177_mis_G_A	1465.23	6400.348	2457.89
177_mis_G_C	178.69	277.623	46.23
177_mis_G_T	10077.91	2843.765	1298.29
178_mis_C_A	6039.60	3106.382	2280.68
178_mis_C_G	178.69	405.180	762.79
178_mis_C_T	178.69	3826.703	5636.20
179_mis_T_A	357.37	375.167	466.15
179_mis_T_C	285.90	532.737	331.31
179_mis_T_G	679.01	1005.447	878.37
180_mis_A_C	214.42	292.630	470.00
180_mis_A_G	178.69	412.684	928.45
180_mis_A_T	107.21	187.583	269.67
181_mis_A_C	393.11	367.664	412.22
181_mis_A_G	35.74	607.770	2396.25
181_mis_A_T	35.74	210.094	296.64
182_mis_T_A	285.90	322.644	362.13
182_mis_T_C	71.47	315.140	516.23
182_mis_T_G	357.37	465.207	462.30
183_mis_A_C	321.64	277.623	416.07
183_mis_A_G	250.16	510.227	751.24
183_mis_A_T	71.47	75.033	154.10
184_mis_A_C	107.21	412.684	485.41
184_mis_A_G	142.95	352.657	1502.47
184_mis_A_T	142.95	112.550	157.95
185_mis_G_A	357.37	525.234	1402.31
185_mis_G_C	107.21	97.543	50.08
185_mis_G_T	607.53	390.174	658.78
186_mis_A_C	285.90	232.603	400.66
186_mis_A_G	250.16	495.220	1864.61
186_mis_A_T	214.42	210.094	285.08
187_mis_T_A	250.16	480.214	616.40
187_mis_T_C	142.95	240.107	531.64
187_mis_T_G	643.27	502.724	508.53
188_mis_A_C	500.32	397.677	435.33
188_mis_A_G	142.95	420.187	1679.69
188_mis_A_T	178.69	157.570	327.46
189_mis_T_A	250.16	390.174	631.81
189_mis_T_C	142.95	285.127	354.43
189_mis_T_G	357.37	600.267	443.04
190_mis_C_A	393.11	870.387	862.96
190_mis_C_G	0.00	67.530	104.02
190_mis_C_T	214.42	90.040	412.22
191_mis_A_C	285.90	495.220	473.86
191_mis_A_G	357.37	217.597	739.68
191_mis_A_T	107.21	300.134	246.56
192_mis_T_A	178.69	345.154	439.18
192_mis_T_C	285.90	480.214	489.27
192_mis_T_G	786.22	637.784	708.86
193_mis_C_A	214.42	660.294	523.94
193_mis_C_G	35.74	105.047	84.75
193_mis_C_T	0.00	322.644	747.38
194_mis_G_A	142.95	562.750	631.81
194_mis_G_C	71.47	90.040	92.46
194_mis_G_T	107.21	225.100	181.07
195_mis_G_A	357.37	1328.091	1228.95
195_mis_G_C	250.16	187.583	115.57
195_mis_G_T	714.75	682.804	824.43
196_mis_C_A	71.47	375.167	570.17
196_mis_C_G	250.16	285.127	574.02
196_mis_C_T	178.69	607.770	2103.46
197_mis_T_A	107.21	60.027	235.00
197_mis_T_C	71.47	165.073	200.33
197_mis_T_G	321.64	367.664	323.61
198_mis_T_A	142.95	202.590	373.69
198_mis_T_C	285.90	270.120	624.10
198_mis_T_G	1286.54	1148.011	1552.56
199_mis_T_A	35.74	390.174	558.61
199_mis_T_C	393.11	585.260	716.56
199_mis_T_G	571.80	360.160	547.05

## Normalized table: miss_sequencer_by_string.

	s1	s2	s3
024_mis_C_A	419.43	416.282	444.25
024_mis_C_G	83.89	432.933	454.58
024_mis_C_T	754.97	691.028	743.86
025_mis_C_A	1174.40	641.074	609.55
025_mis_C_G	1342.17	1090.658	898.83
025_mis_C_T	1342.17	1140.612	1260.43
026_mis_G_A	754.97	1182.240	1332.75
026_mis_G_C	922.74	4587.423	6312.51
026_mis_G_T	4781.48	2780.761	2448.55
027_mis_T_A	335.54	624.422	692.21
027_mis_T_C	17532.09	7293.254	8378.79
027_mis_T_G	419.43	9657.733	9969.83
028_mis_C_A	251.66	299.723	588.89
028_mis_C_G	1593.83	1215.542	1033.14
028_mis_C_T	754.97	2564.295	1983.63
029_mis_G_A	587.20	616.097	681.87
029_mis_G_C	335.54	1556.893	1611.70
029_mis_G_T	4362.05	2206.293	2086.95
030_mis_T_A	335.54	208.141	185.97
030_mis_T_C	1174.40	1290.473	1270.77
030_mis_T_G	2348.80	18965.790	20094.64
031_mis_T_A	83.89	166.513	134.31
031_mis_T_C	671.08	824.238	754.19
031_mis_T_G	167.77	299.723	299.61
032_mis_T_A	0.00	158.187	185.97
032_mis_T_C	335.54	582.794	671.54
032_mis_T_G	419.43	208.141	258.29
033_mis_T_A	2181.03	890.843	878.17
033_mis_T_C	754.97	999.076	847.18
033_mis_T_G	167.77	141.536	289.28
034_mis_A_C	21726.37	8708.611	9391.27
034_mis_A_G	503.31	832.563	795.52
034_mis_A_T	1342.17	3663.278	3657.33
035_mis_C_A	5452.56	5777.989	5744.28
035_mis_C_G	0.00	58.279	144.64
035_mis_C_T	671.08	566.143	723.20
036_mis_A_C	9395.18	26850.164	30353.75
036_mis_A_G	1342.17	949.122	950.49
036_mis_A_T	251.66	199.815	175.63
037_mis_A_C	23655.73	13687.339	14804.94
037_mis_A_G	838.86	699.353	650.88
037_mis_A_T	167.77	208.141	227.29
038_mis_C_A	335.54	5461.615	5186.38
038_mis_C_G	838.86	441.259	537.23
038_mis_C_T	1006.63	557.817	650.88
039_mis_G_A	1509.94	1115.635	1146.79
039_mis_G_C	1090.51	13104.545	15259.53
039_mis_G_T	11240.67	5594.825	5558.31
040_mis_T_A	167.77	532.841	526.90
040_mis_T_C	22229.68	10040.712	10155.80
040_mis_T_G	922.74	10681.786	10796.35
041_mis_C_A	419.43	449.584	433.92
041_mis_C_G	335.54	549.492	557.90
041_mis_C_T	1090.51	1948.198	1591.04
042_mis_G_A	671.08	974.099	898.83
042_mis_G_C	671.08	6693.808	7324.99
042_mis_G_T	2516.57	2056.431	2283.25
043_mis_T_A	1174.40	707.679	1022.81
043_mis_T_C	2432.68	1906.570	1808.00
043_mis_T_G	21474.71	22321.020	23008.10
044_mis_G_A	2768.22	1873.267	1890.65
044_mis_G_C	503.31	316.374	320.27
044_mis_G_T	1006.63	4137.839	4494.17
045_mis_A_C	33470.35	15985.214	15827.75
045_mis_A_G	1090.51	2164.664	2365.90
045_mis_A_T	671.08	749.307	754.19
046_mis_C_A	335.54	3030.530	3058.10
046_mis_C_G	83.89	91.582	175.63
046_mis_C_T	2097.14	857.540	847.18
047_mis_T_A	251.66	382.979	382.26
047_mis_T_C	3019.88	18974.116	19888.01
047_mis_T_G	22984.65	7742.838	8823.04
048_mis_G_A	671.08	890.843	764.53
048_mis_G_C	335.54	249.769	227.29
048_mis_G_T	4110.39	3654.952	4018.93
049_mis_G_A	671.08	1065.681	981.49
049_mis_G_C	503.31	324.700	278.95
049_mis_G_T	1258.28	2897.320	2944.46
050_mis_G_A	4781.48	2514.341	2810.15
050_mis_G_C	251.66	324.700	206.63
050_mis_G_T	3019.88	1257.170	1601.37
051_mis_A_C	2600.45	2197.967	2386.56
051_mis_A_G	1845.48	7010.182	7139.02
051_mis_A_T	922.74	566.143	537.23
052_mis_A_C	2097.14	1806.662	1828.66
052_mis_A_G	1006.63	949.122	826.51
052_mis_A_T	0.00	133.210	103.31
053_mis_A_C	5117.02	2572.620	2727.50
053_mis_A_G	503.31	524.515	475.25
053_mis_A_T	167.77	108.233	82.65
054_mis_A_C	15351.06	10157.271	9897.51
054_mis_A_G	419.43	466.235	413.26
054_mis_A_T	503.31	133.210	165.30
055_mis_C_A	1761.60	21838.133	21675.35
055_mis_C_G	0.00	8.326	51.66
055_mis_C_T	503.31	466.235	309.94
056_mis_C_A	1258.28	641.074	630.22
056_mis_C_G	83.89	91.582	51.66
056_mis_C_T	838.86	432.933	578.56
057_mis_C_A	587.20	283.072	444.25
057_mis_C_G	0.00	91.582	51.66
057_mis_C_T	3019.88	1273.822	1188.11
058_mis_T_A	838.86	482.887	599.22
058_mis_T_C	2348.80	12563.379	13058.93
058_mis_T_G	6375.30	3080.484	3502.36
059_mis_G_A	1593.83	999.076	1105.46
059_mis_G_C	1342.17	857.540	712.87
059_mis_G_T	2013.25	9183.172	9732.21
060_mis_G_A	587.20	449.584	557.90
060_mis_G_C	23739.62	9757.641	10589.72
060_mis_G_T	5871.99	2364.479	2520.87
061_mis_C_A	419.43	241.443	392.59
061_mis_C_G	1342.17	1148.937	1250.10
061_mis_C_T	1174.40	1057.355	1146.79
062_mis_G_A	587.20	591.120	537.23
062_mis_G_C	419.43	4187.793	4721.46
062_mis_G_T	5033.13	2214.618	2055.95
063_mis_T_A	838.86	649.399	764.53
063_mis_T_C	1426.05	1989.826	1715.02
063_mis_T_G	1761.60	22795.581	22315.89
064_mis_T_A	2684.34	1090.658	1291.43
064_mis_T_C	922.74	1215.542	1074.47
064_mis_T_G	251.66	141.536	123.98
065_mis_A_C	27430.58	12172.074	12676.67
065_mis_A_G	1090.51	666.051	681.87
065_mis_A_T	1509.94	5594.825	6178.20
066_mis_C_A	2264.91	5111.938	4742.13
066_mis_C_G	83.89	83.256	123.98
066_mis_C_T	587.20	657.725	630.22
067_mis_C_A	754.97	1365.404	1281.10
067_mis_C_G	0.00	141.536	154.97
067_mis_C_T	922.74	574.469	661.21
068_mis_C_A	6375.30	3080.484	3161.42
068_mis_C_G	83.89	133.210	154.97
068_mis_C_T	838.86	716.004	671.54
069_mis_A_C	1593.83	824.238	826.51
069_mis_A_G	922.74	657.725	712.87
069_mis_A_T	83.89	141.536	113.65
070_mis_A_C	3103.77	2472.713	2355.57
070_mis_A_G	587.20	907.494	836.85
070_mis_A_T	671.08	591.120	681.87
071_mis_C_A	503.31	649.399	702.54
071_mis_C_G	0.00	41.628	61.99
071_mis_C_T	587.20	308.048	413.26
072_mis_T_A	251.66	208.141	206.63
072_mis_T_C	587.20	815.912	723.20
072_mis_T_G	754.97	299.723	382.26
073_mis_T_A	335.54	374.653	392.59
073_mis_T_C	587.20	716.004	692.21
073_mis_T_G	251.66	191.489	289.28
074_mis_A_C	335.54	1057.355	950.49
074_mis_A_G	419.43	507.864	650.88
074_mis_A_T	1090.51	749.307	671.54
075_mis_A_C	503.31	566.143	392.59
075_mis_A_G	587.20	499.538	454.58
075_mis_A_T	419.43	374.653	464.91
076_mis_T_A	671.08	1107.309	1146.79
076_mis_T_C	1593.83	815.912	981.49
076_mis_T_G	251.66	466.235	526.90
077_mis_C_A	587.20	299.723	227.29
077_mis_C_G	83.89	58.279	113.65
077_mis_C_T	587.20	557.817	568.23
078_mis_G_A	671.08	1074.006	919.50
078_mis_G_C	587.20	599.446	630.22
078_mis_G_T	1006.63	474.561	619.89
079_mis_C_A	503.31	524.515	692.21
079_mis_C_G	0.00	191.489	134.31
079_mis_C_T	335.54	316.374	361.60
080_mis_C_A	671.08	308.048	299.61
080_mis_C_G	167.77	66.605	72.32
080_mis_C_T	503.31	482.887	526.90
081_mis_T_A	167.77	449.584	526.90
081_mis_T_C	1090.51	915.819	909.17
081_mis_T_G	335.54	716.004	547.57
082_mis_T_A	335.54	333.025	237.62
082_mis_T_C	1090.51	1032.378	1198.45
082_mis_T_G	83.89	283.072	320.27
083_mis_G_A	503.31	666.051	630.22
083_mis_G_C	754.97	482.887	392.59
083_mis_G_T	1006.63	1007.402	1012.48
084_mis_C_A	83.89	291.397	278.95
084_mis_C_G	251.66	199.815	289.28
084_mis_C_T	1090.51	1323.775	1405.07
085_mis_A_C	587.20	890.843	568.23
085_mis_A_G	1509.94	1182.240	1467.06
085_mis_A_T	83.89	149.861	154.97
086_mis_G_A	251.66	865.866	898.83
086_mis_G_C	838.86	391.305	485.58
086_mis_G_T	587.20	616.097	557.90
087_mis_C_A	1509.94	482.887	454.58
087_mis_C_G	0.00	133.210	72.32
087_mis_C_T	335.54	499.538	464.91
088_mis_A_C	1677.71	1956.524	2024.96
088_mis_A_G	1174.40	957.448	1198.45
088_mis_A_T	1006.63	882.517	847.18
089_mis_C_A	251.66	333.025	402.93
089_mis_C_G	0.00	74.931	82.65
089_mis_C_T	419.43	549.492	578.56
090_mis_A_C	251.66	1365.404	1467.06
090_mis_A_G	1258.28	765.958	847.18
090_mis_A_T	671.08	641.074	547.57
091_mis_T_A	503.31	724.330	754.19
091_mis_T_C	1426.05	1240.519	1363.75
091_mis_T_G	1258.28	349.676	464.91
092_mis_C_A	503.31	258.095	268.62
092_mis_C_G	251.66	141.536	61.99
092_mis_C_T	335.54	341.351	516.57
093_mis_C_A	251.66	599.446	599.22
093_mis_C_G	0.00	133.210	185.97
093_mis_C_T	167.77	607.771	526.90
094_mis_C_A	335.54	341.351	268.62
094_mis_C_G	167.77	108.233	134.31
094_mis_C_T	335.54	324.700	289.28
095_mis_C_A	167.77	191.489	371.93
095_mis_C_G	0.00	116.559	72.32
095_mis_C_T	671.08	283.072	361.60
096_mis_C_A	419.43	333.025	278.95
096_mis_C_G	0.00	49.954	51.66
096_mis_C_T	1090.51	1074.006	1012.48
097_mis_T_A	419.43	274.746	351.27
097_mis_T_C	419.43	890.843	1012.48
097_mis_T_G	167.77	191.489	113.65
098_mis_T_A	251.66	507.864	475.25
098_mis_T_C	671.08	1007.402	1084.80
098_mis_T_G	754.97	283.072	402.93
099_mis_T_A	167.77	191.489	154.97
099_mis_T_C	1593.83	1057.355	1239.77
099_mis_T_G	503.31	299.723	340.94
100_mis_C_A	251.66	133.210	123.98
100_mis_C_G	83.89	58.279	10.33
100_mis_C_T	838.86	599.446	702.54
101_mis_G_A	2097.14	1665.126	1838.99
101_mis_G_C	587.20	616.097	609.55
101_mis_G_T	838.86	474.561	371.93
102_mis_C_A	503.31	399.630	433.92
102_mis_C_G	0.00	174.838	247.95
102_mis_C_T	1929.37	1640.149	1580.71
103_mis_C_A	167.77	233.118	185.97
103_mis_C_G	83.89	99.908	196.30
103_mis_C_T	922.74	691.028	743.86
104_mis_A_C	167.77	341.351	475.25
104_mis_A_G	1006.63	899.168	836.85
104_mis_A_T	419.43	191.489	268.62
105_mis_G_A	251.66	391.305	382.26
105_mis_G_C	167.77	108.233	154.97
105_mis_G_T	587.20	582.794	826.51
106_mis_C_A	503.31	591.120	743.86
106_mis_C_G	167.77	133.210	134.31
106_mis_C_T	167.77	283.072	340.94
107_mis_T_A	419.43	183.164	278.95
107_mis_T_C	754.97	865.866	816.18
107_mis_T_G	1509.94	990.750	1363.75
108_mis_G_A	587.20	557.817	764.53
108_mis_G_C	167.77	174.838	216.96
108_mis_G_T	167.77	466.235	526.90
109_mis_G_A	1174.40	1082.332	1105.46
109_mis_G_C	83.89	74.931	175.63
109_mis_G_T	1258.28	541.166	578.56
110_mis_C_A	2097.14	957.448	795.52
110_mis_C_G	6543.08	2597.597	2324.57
110_mis_C_T	2432.68	2206.293	2221.26
111_mis_G_A	1342.17	1240.519	1177.78
111_mis_G_C	83.89	274.746	268.62
111_mis_G_T	1006.63	549.492	774.86
112_mis_T_A	2097.14	1706.755	1673.69
112_mis_T_C	671.08	699.353	630.22
112_mis_T_G	23320.19	20156.355	20084.30
113_mis_A_C	0.00	133.210	123.98
113_mis_A_G	1090.51	1307.124	1219.11
113_mis_A_T	251.66	324.700	361.60
114_mis_A_C	83.89	174.838	175.63
114_mis_A_G	1006.63	907.494	1126.13
114_mis_A_T	335.54	649.399	526.90
115_mis_T_A	5033.13	4670.680	4504.50
115_mis_T_C	754.97	857.540	898.83
115_mis_T_G	10737.35	9482.895	9318.95
116_mis_A_C	2181.03	2289.549	2768.82
116_mis_A_G	2516.57	2222.944	2076.62
116_mis_A_T	754.97	374.653	320.27
117_mis_G_A	335.54	616.097	599.22
117_mis_G_C	587.20	399.630	402.93
117_mis_G_T	335.54	299.723	351.27
118_mis_C_A	2348.80	2297.874	1838.99
118_mis_C_G	3355.42	3430.160	2820.48
118_mis_C_T	754.97	982.425	1053.81
119_mis_G_A	1090.51	707.679	681.87
119_mis_G_C	251.66	366.328	454.58
119_mis_G_T	754.97	308.048	247.95
120_mis_A_C	1426.05	1790.011	1456.73
120_mis_A_G	2264.91	2064.757	2128.28
120_mis_A_T	251.66	399.630	547.57
121_mis_A_C	167.77	308.048	382.26
121_mis_A_G	3942.62	4012.955	3688.32
121_mis_A_T	251.66	308.048	227.29
122_mis_G_A	587.20	616.097	671.54
122_mis_G_C	0.00	258.095	216.96
122_mis_G_T	587.20	466.235	392.59
123_mis_A_C	167.77	216.466	175.63
123_mis_A_G	3271.54	3538.394	3254.40
123_mis_A_T	0.00	216.466	175.63
124_mis_G_A	922.74	932.471	816.18
124_mis_G_C	83.89	141.536	175.63
124_mis_G_T	4865.36	3963.001	4556.16
125_mis_G_A	1258.28	649.399	743.86
125_mis_G_C	419.43	399.630	382.26
125_mis_G_T	7969.13	6036.083	5475.66
126_mis_C_A	2013.25	2006.477	1043.47
126_mis_C_G	5200.91	5744.686	3905.28
126_mis_C_T	6123.65	6285.852	3688.32
127_mis_C_A	1677.71	1706.755	1498.06
127_mis_C_G	587.20	1357.078	1291.43
127_mis_C_T	2348.80	2522.666	2241.92
128_mis_C_A	4445.94	2414.433	2500.21
128_mis_C_G	3271.54	2955.599	2799.82
128_mis_C_T	2264.91	2131.362	2045.62
129_mis_G_A	1342.17	2148.013	2345.24
129_mis_G_C	335.54	574.469	578.56
129_mis_G_T	167.77	391.305	371.93
130_mis_C_A	6123.65	6002.781	6498.47
130_mis_C_G	3103.77	2722.482	2510.54
130_mis_C_T	503.31	815.912	795.52
131_mis_A_C	21978.02	19531.933	17904.37
131_mis_A_G	3690.97	3246.997	2985.78
131_mis_A_T	251.66	541.166	557.90
132_mis_C_A	2768.22	2872.343	3016.78
132_mis_C_G	1006.63	1015.727	1136.46
132_mis_C_T	671.08	491.212	650.88
133_mis_C_A	838.86	999.076	681.87
133_mis_C_G	838.86	1132.286	1033.14
133_mis_C_T	922.74	516.189	774.86
134_mis_G_A	1006.63	641.074	764.53
134_mis_G_C	335.54	316.374	309.94
134_mis_G_T	1174.40	940.796	1022.81
135_mis_A_C	1845.48	2689.179	2665.51
135_mis_A_G	2852.11	2214.618	2489.88
135_mis_A_T	587.20	707.679	681.87
136_mis_T_A	1845.48	1515.265	1332.75
136_mis_T_C	2516.57	2247.921	2179.93
136_mis_T_G	4529.82	2880.669	3285.40
137_mis_C_A	1593.83	1590.196	1363.75
137_mis_C_G	1090.51	1190.565	1167.45
137_mis_C_T	1174.40	899.168	826.51
138_mis_G_A	1593.83	1407.032	1560.05
138_mis_G_C	1006.63	1065.681	991.82
138_mis_G_T	335.54	507.864	516.57
139_mis_C_A	5033.13	4154.490	3977.60
139_mis_C_G	1593.83	1365.404	1425.74
139_mis_C_T	419.43	591.120	692.21
140_mis_C_A	5871.99	4304.352	4638.81
140_mis_C_G	1090.51	2031.454	2272.92
140_mis_C_T	922.74	840.889	867.84
141_mis_C_A	1593.83	1448.660	1415.41
141_mis_C_G	419.43	599.446	547.57
141_mis_C_T	1342.17	1581.870	1518.72
142_mis_T_A	838.86	649.399	754.19
142_mis_T_C	1593.83	1706.755	1704.69
142_mis_T_G	14512.21	12413.517	11416.23
143_mis_T_A	1929.37	1373.729	1250.10
143_mis_T_C	2684.34	2506.015	2004.30
143_mis_T_G	22145.79	20123.053	19588.40
144_mis_C_A	1258.28	1548.568	1746.01
144_mis_C_G	838.86	1032.378	785.19
144_mis_C_T	503.31	1065.681	971.15
145_mis_C_A	4949.25	4404.259	4432.18
145_mis_C_G	419.43	424.607	485.58
145_mis_C_T	838.86	724.330	785.19
146_mis_C_A	6375.30	6627.203	5795.93
146_mis_C_G	83.89	258.095	237.62
146_mis_C_T	922.74	774.284	847.18
147_mis_A_C	1006.63	865.866	599.22
147_mis_A_G	838.86	1157.263	1177.78
147_mis_A_T	167.77	258.095	340.94
148_mis_A_C	1761.60	2014.803	1684.02
148_mis_A_G	1258.28	1590.196	1529.05
148_mis_A_T	419.43	924.145	857.51
149_mis_C_A	2516.57	2189.641	2086.95
149_mis_C_G	503.31	224.792	206.63
149_mis_C_T	251.66	432.933	537.23
150_mis_A_C	2936.00	2664.202	2427.89
150_mis_A_G	1509.94	2206.293	1828.66
150_mis_A_T	167.77	208.141	216.96
151_mis_G_A	1258.28	774.284	878.17
151_mis_G_C	167.77	108.233	103.31
151_mis_G_T	922.74	915.819	867.84
152_mis_T_A	419.43	499.538	444.25
152_mis_T_C	838.86	765.958	1115.79
152_mis_T_G	5200.91	4454.213	3967.27
153_mis_T_A	503.31	441.259	320.27
153_mis_T_C	1929.37	2206.293	2014.63
153_mis_T_G	19125.91	16667.915	16871.23
154_mis_G_A	922.74	716.004	578.56
154_mis_G_C	167.77	299.723	382.26
154_mis_G_T	754.97	699.353	754.19
155_mis_C_A	1426.05	1165.589	1188.11
155_mis_C_G	2768.22	2497.690	2117.94
155_mis_C_T	3355.42	2988.902	2913.46
156_mis_G_A	1006.63	1049.030	1084.80
156_mis_G_C	838.86	707.679	671.54
156_mis_G_T	419.43	491.212	495.91
157_mis_C_A	2768.22	3488.440	3595.34
157_mis_C_G	1258.28	899.168	909.17
157_mis_C_T	419.43	591.120	516.57
158_mis_A_C	2264.91	1681.778	1653.03
158_mis_A_G	6123.65	7468.092	6663.77
158_mis_A_T	251.66	366.328	475.25
159_mis_G_A	1258.28	607.771	454.58
159_mis_G_C	419.43	224.792	278.95
159_mis_G_T	4613.71	4212.770	3399.04
160_mis_C_A	1509.94	1182.240	1498.06
160_mis_C_G	2348.80	2888.994	2314.24
160_mis_C_T	671.08	1032.378	1043.47
161_mis_C_A	3019.88	3396.858	2758.49
161_mis_C_G	671.08	832.563	795.52
161_mis_C_T	503.31	699.353	785.19
162_mis_T_A	3103.77	3022.204	2551.86
162_mis_T_C	1509.94	1581.870	1735.68
162_mis_T_G	5284.79	5603.150	5351.68
163_mis_G_A	1593.83	1548.568	1270.77
163_mis_G_C	83.89	116.559	144.64
163_mis_G_T	1593.83	1298.799	1198.45
164_mis_A_C	167.77	158.187	196.30
164_mis_A_G	1342.17	1332.101	1270.77
164_mis_A_T	419.43	716.004	671.54
165_mis_A_C	83.89	141.536	113.65
165_mis_A_G	2181.03	2256.246	2138.61
165_mis_A_T	503.31	283.072	423.59
166_mis_T_A	2097.14	2506.015	2438.22
166_mis_T_C	754.97	799.261	1002.15
166_mis_T_G	13253.92	13004.637	11054.63
167_mis_G_A	1677.71	1590.196	1808.00
167_mis_G_C	0.00	108.233	92.98
167_mis_G_T	167.77	299.723	299.61
168_mis_G_A	2684.34	3147.089	3192.41
168_mis_G_C	251.66	216.466	289.28
168_mis_G_T	167.77	457.910	495.91
169_mis_C_A	1929.37	2039.780	1931.98
169_mis_C_G	1761.60	1565.219	1446.40
169_mis_C_T	1677.71	2397.782	2355.57
170_mis_G_A	838.86	1290.473	940.16
170_mis_G_C	503.31	224.792	268.62
170_mis_G_T	335.54	516.189	402.93
171_mis_A_C	4781.48	4162.816	4215.22
171_mis_A_G	587.20	1057.355	1043.47
171_mis_A_T	419.43	607.771	702.54
172_mis_A_C	167.77	224.792	289.28
172_mis_A_G	1426.05	1606.847	1374.08
172_mis_A_T	167.77	366.328	351.27
173_mis_T_A	1342.17	1215.542	1343.09
173_mis_T_C	587.20	740.981	743.86
173_mis_T_G	5788.10	4728.959	4649.14
174_mis_G_A	922.74	907.494	950.49
174_mis_G_C	167.77	283.072	227.29
174_mis_G_T	167.77	399.630	433.92
175_mis_G_A	922.74	932.471	1115.79
175_mis_G_C	167.77	216.466	123.98
175_mis_G_T	4194.28	3471.789	3585.01
176_mis_C_A	6543.08	5894.547	5537.65
176_mis_C_G	2348.80	2439.410	1725.35
176_mis_C_T	3523.19	4329.329	4225.56
177_mis_G_A	838.86	1065.681	1022.81
177_mis_G_C	251.66	158.187	237.62
177_mis_G_T	335.54	749.307	712.87
178_mis_C_A	5955.88	6102.688	4804.12
178_mis_C_G	1090.51	1282.147	1115.79
178_mis_C_T	1006.63	849.215	1043.47
179_mis_T_A	1006.63	1665.126	1539.38
179_mis_T_C	419.43	732.656	774.86
179_mis_T_G	2684.34	3355.230	3430.04
180_mis_A_C	2013.25	1040.704	1157.12
180_mis_A_G	419.43	341.351	454.58
180_mis_A_T	1174.40	765.958	681.87
181_mis_A_C	922.74	1065.681	1012.48
181_mis_A_G	503.31	358.002	609.55
181_mis_A_T	838.86	516.189	454.58
182_mis_T_A	1426.05	1615.173	1115.79
182_mis_T_C	587.20	466.235	475.25
182_mis_T_G	2097.14	2281.223	1900.98
183_mis_A_C	1258.28	1182.240	1312.09
183_mis_A_G	335.54	333.025	475.25
183_mis_A_T	671.08	566.143	619.89
184_mis_A_C	1342.17	1207.217	1084.80
184_mis_A_G	671.08	674.376	826.51
184_mis_A_T	167.77	374.653	361.60
185_mis_G_A	1090.51	1173.914	1115.79
185_mis_G_C	251.66	349.676	185.97
185_mis_G_T	1174.40	1223.868	1136.46
186_mis_A_C	1174.40	1307.124	1260.43
186_mis_A_G	419.43	549.492	764.53
186_mis_A_T	419.43	474.561	402.93
187_mis_T_A	1593.83	1556.893	1570.38
187_mis_T_C	754.97	557.817	692.21
187_mis_T_G	2348.80	2231.269	2076.62
188_mis_A_C	1174.40	1631.824	1343.09
188_mis_A_G	587.20	341.351	578.56
188_mis_A_T	1006.63	699.353	537.23
189_mis_T_A	1174.40	999.076	1260.43
189_mis_T_C	922.74	890.843	764.53
189_mis_T_G	2768.22	1823.313	1704.69
190_mis_C_A	2181.03	2048.106	1766.67
190_mis_C_G	0.00	149.861	92.98
190_mis_C_T	167.77	208.141	247.95
191_mis_A_C	2768.22	2222.944	2117.94
191_mis_A_G	335.54	516.189	382.26
191_mis_A_T	503.31	557.817	650.88
192_mis_T_A	1426.05	1057.355	1219.11
192_mis_T_C	2097.14	1290.473	1405.07
192_mis_T_G	2600.45	2339.503	2345.24
193_mis_C_A	671.08	874.191	805.85
193_mis_C_G	83.89	516.189	371.93
193_mis_C_T	83.89	166.513	206.63
194_mis_G_A	671.08	391.305	433.92
194_mis_G_C	503.31	532.841	309.94
194_mis_G_T	335.54	283.072	320.27
195_mis_G_A	671.08	691.028	640.55
195_mis_G_C	1090.51	982.425	847.18
195_mis_G_T	1426.05	1448.660	1394.74
196_mis_C_A	1090.51	674.376	609.55
196_mis_C_G	2348.80	2048.106	2500.21
196_mis_C_T	2264.91	1623.498	1684.02
197_mis_T_A	335.54	233.118	154.97
197_mis_T_C	503.31	241.443	382.26
197_mis_T_G	1761.60	1373.729	1177.78
198_mis_T_A	167.77	499.538	320.27
198_mis_T_C	251.66	532.841	433.92
198_mis_T_G	4865.36	4321.003	4463.18
199_mis_T_A	83.89	158.187	175.63
199_mis_T_C	1593.83	1407.032	1198.45
199_mis_T_G	1677.71	1914.895	1787.34

## Normalized table: miss_reads_by_ref_nt.

	s1	s2	s3
A	77570	160363	263245
C	432402	392806	420662
G	415082	341318	214773
T	74947	105513	101319

## Normalized table: miss_indexes_by_ref_nt.

	s1	s2	s3
A	81302	162500	261477
C	421521	385634	411655
G	415124	335137	214218
T	82053	116729	112651

## Normalized table: miss_sequencer_by_ref_nt.

	s1	s2	s3
A	275984	240544	243243
C	221374	238696	227374
G	172301	168594	175717
T	330341	352166	353666

## Normalized table: miss_reads_by_hit_nt.

	s1	s2	s3
A	417789	504509	314618
C	82669	71652	75899
G	75975	179391	285063
T	423567	244448	324420

## Normalized table: miss_indexes_by_hit_nt.

	s1	s2	s3
A	401329	489901	310542
C	87878	80031	84855
G	81660	185453	287500
T	429133	244616	317103

## Normalized table: miss_sequencer_by_hit_nt.

	s1	s2	s3
A	193021	206051	201804
C	325644	292321	303052
G	314906	341767	335999
T	166429	159860	159145

## Normalized table: miss_reads_by_type.

	s1	s2	s3
A_C	46168	31467	32850
A_G	23952	113640	211555
A_T	7450	15255	18840
C_A	348760	226116	134895
C_G	12193	28143	38221
C_T	71449	138546	247546
G_A	61397	239912	147196
G_C	9017	10760	9544
G_T	344668	90646	58033
T_A	7632	38481	32527
T_C	27484	29424	33505
T_G	39831	37608	35287

## Normalized table: miss_indexes_by_type.

	s1	s2	s3
A_C	46423	33885	36283
A_G	26124	111770	205727
A_T	8756	16845	19467
C_A	332607	221243	134263
C_G	12687	28873	38671
C_T	76228	135518	238720
G_A	60217	230247	143409
G_C	10757	12636	11893
G_T	344150	92254	58916
T_A	8505	38410	32869
T_C	30698	33510	36680
T_G	42849	44810	43102

## Normalized table: miss_sequencer_by_type.

	s1	s2	s3
A_C	200738	152317	155075
A_G	55281	61943	61389
A_T	19965	26284	26779
C_A	107625	126999	122551
C_G	51757	50562	45903
C_T	61991	61135	58920
G_A	46556	43418	44095
G_C	41272	52735	58176
G_T	84473	72441	73446
T_A	38839	35634	35158
T_C	83634	87269	89801
T_G	207868	229263	228707

## Normalized table: miss_reads_by_trans.

	s1	s2	s3
transition	184282	521523	639803
transversion	815718	478477	360197

## Normalized table: miss_indexes_by_trans.

	s1	s2	s3
transition	193267	511045	624536
transversion	806733	488955	375464

## Normalized table: miss_sequencer_by_trans.

	s1	s2	s3
transition	247462	253765	254205
transversion	752538	746235	745795

## Normalized table: miss_reads_by_strength.

	s1	s2	s3
strong_strong	21209	38904	47765
strong_weak	826274	695220	587671
weak_strong	137435	212140	313197
weak_weak	15082	53736	51367

## Normalized table: miss_indexes_by_strength.

	s1	s2	s3
strong_strong	23444	41508	50564
strong_weak	813201	679262	575309
weak_strong	146094	223975	321791
weak_weak	17261	55255	52336

## Normalized table: miss_sequencer_by_strength.

	s1	s2	s3
strong_strong	93029	103296	104079
strong_weak	300646	303994	299012
weak_strong	547521	530792	534972
weak_weak	58804	61918	61937

## Normalized table: insert_reads_by_position.

	s1	s2	s3
24	0	0	1688.3
25	0	6494	0.0
26	0	3711	0.0
27	0	11132	0.0
28	0	0	1688.3
29	0	0	519.5
30	0	15770	10129.9
35	0	0	3116.9
36	0	6494	1039.0
42	0	12987	0.0
44	0	0	649.4
45	0	0	1688.3
46	127660	8349	4675.3
47	0	4638	389.6
48	0	144712	107662.3
50	0	0	2597.4
51	85106	179963	450000.0
52	0	0	18701.3
55	0	0	33246.8
58	0	0	389.6
59	0	0	909.1
61	0	0	389.6
62	0	2783	0.0
69	0	0	649.4
72	0	0	62727.3
81	0	0	8311.7
91	0	66790	90649.4
92	127660	177180	28441.6
93	0	0	4675.3
97	0	241187	97792.2
100	0	21336	0.0
105	0	0	1039.0
110	0	0	519.5
120	0	0	519.5
123	0	0	41558.4
124	0	0	519.5
126	148936	0	0.0
130	0	0	649.4
132	0	9276	0.0
134	85106	0	0.0
137	0	0	1298.7
138	0	0	519.5
142	0	0	4026.0
144	0	0	11688.3
148	0	0	2597.4
149	0	11132	0.0
151	0	11132	0.0
154	0	59369	0.0
156	0	5566	0.0
171	148936	0	519.5
174	148936	0	0.0
177	0	0	1039.0
182	127660	0	0.0
190	0	0	779.2

## Normalized table: insert_indexes_by_position.

	s1	s2	s3
24	0	0	1269
25	0	6944	0
26	0	6944	0
27	0	6944	0
28	0	0	1269
29	0	0	1269
30	0	20833	10152
35	0	0	2538
36	0	6944	1269
42	0	6944	0
44	0	0	1269
45	0	0	1269
46	222222	6944	5076
47	0	6944	1269
48	0	131944	97716
50	0	0	2538
51	111111	173611	454315
52	0	0	15228
55	0	0	20305
58	0	0	1269
59	0	0	1269
61	0	0	1269
62	0	6944	0
69	0	0	1269
72	0	0	49492
81	0	0	10152
91	0	55556	91371
92	111111	138889	44416
93	0	0	7614
97	0	277778	105330
100	0	20833	0
105	0	0	2538
110	0	0	1269
120	0	0	1269
123	0	0	30457
124	0	0	1269
126	111111	0	0
130	0	0	1269
132	0	6944	0
134	111111	0	0
137	0	0	1269
138	0	0	1269
142	0	0	8883
144	0	0	11421
148	0	0	5076
149	0	27778	0
151	0	27778	0
154	0	55556	0
156	0	6944	0
171	111111	0	1269
174	111111	0	0
177	0	0	1269
182	111111	0	0
190	0	0	1269

## Normalized table: insert_sequencer_by_position.

	s1	s2	s3
24	0	9259	21739
26	0	18519	0
28	0	9259	0
29	0	37037	43478
30	0	0	21739
34	0	18519	32609
35	0	27778	0
36	0	18519	21739
38	0	18519	21739
39	0	18519	0
40	0	18519	0
41	0	0	10870
42	0	18519	43478
45	0	18519	0
46	0	18519	32609
48	333333	46296	54348
51	0	27778	54348
52	0	0	10870
55	0	0	32609
58	0	18519	10870
59	0	9259	0
61	166667	9259	0
62	0	9259	0
63	0	9259	0
66	0	37037	0
69	0	9259	10870
92	333333	148148	152174
97	0	0	32609
108	0	9259	10870
111	0	18519	10870
115	0	18519	10870
116	0	0	10870
117	0	9259	10870
119	0	9259	0
122	0	9259	10870
124	0	9259	0
126	0	0	10870
129	0	9259	21739
131	0	9259	0
134	0	9259	0
136	0	9259	0
138	0	18519	10870
142	0	0	10870
144	0	0	10870
146	0	9259	0
147	0	9259	10870
149	0	27778	65217
151	0	18519	32609
154	0	0	21739
155	0	9259	10870
156	0	46296	0
157	0	18519	0
159	0	9259	0
160	0	0	10870
162	0	18519	0
163	0	9259	0
164	0	0	21739
166	0	18519	0
167	0	9259	10870
168	0	9259	0
170	166667	0	21739
171	0	0	32609
177	0	9259	0
178	0	9259	0
180	0	9259	0
183	0	9259	10870
186	0	9259	0
188	0	0	10870
189	0	9259	0
194	0	18519	0

## Normalized table: insert_reads_by_nt.

	s1	s2	s3
A	234043	191095	499351
C	404255	221707	92597
G	234043	246753	130390
T	127660	340445	277662

## Normalized table: insert_indexes_by_nt.

	s1	s2	s3
A	222222	187500	494924
C	444444	187500	100254
G	222222	250000	120558
T	111111	375000	284264

## Normalized table: insert_sequencer_by_nt.

	s1	s2	s3
A	0e+00	157407	239130
C	5e+05	342593	347826
G	5e+05	379630	304348
T	0e+00	120370	108696

## Normalized table: delete_reads_by_position.

s1	s2	s3

## Normalized table: delete_indexes_by_position.

s1	s2	s3

## Normalized table: delete_sequencer_by_position.

s1	s2	s3

## Normalized table: delete_reads_by_nt.

s1	s2	s3

## Normalized table: delete_indexes_by_nt.

s1	s2	s3

## Normalized table: delete_sequencer_by_nt.

s1	s2	s3

5 Print normalized plots

for (t in 1:length(data_summary[["normalized"]])) {
  message("Normalized table: ", table_name, ".")
  print(data_plots[["normal"]][t])
}

## Normalized table: delete_sequencer_by_nt.

## $miss_reads_by_position

## Normalized table: delete_sequencer_by_nt.

## $miss_indexes_by_position

## Normalized table: delete_sequencer_by_nt.

## $miss_sequencer_by_position

## Normalized table: delete_sequencer_by_nt.

## $miss_reads_by_string

## Normalized table: delete_sequencer_by_nt.

## $miss_indexes_by_string

## Normalized table: delete_sequencer_by_nt.

## $miss_sequencer_by_string

## Normalized table: delete_sequencer_by_nt.

## $miss_reads_by_ref_nt

## Normalized table: delete_sequencer_by_nt.

## $miss_indexes_by_ref_nt

## Normalized table: delete_sequencer_by_nt.

## $miss_sequencer_by_ref_nt

## Normalized table: delete_sequencer_by_nt.

## $miss_reads_by_hit_nt

## Normalized table: delete_sequencer_by_nt.

## $miss_indexes_by_hit_nt

## Normalized table: delete_sequencer_by_nt.

## $miss_sequencer_by_hit_nt

## Normalized table: delete_sequencer_by_nt.

## $miss_reads_by_type

## Normalized table: delete_sequencer_by_nt.

## $miss_indexes_by_type

## Normalized table: delete_sequencer_by_nt.

## $miss_sequencer_by_type

## Normalized table: delete_sequencer_by_nt.

## $miss_reads_by_trans

## Normalized table: delete_sequencer_by_nt.

## $miss_indexes_by_trans

## Normalized table: delete_sequencer_by_nt.

## $miss_sequencer_by_trans

## Normalized table: delete_sequencer_by_nt.

## $miss_reads_by_strength

## Normalized table: delete_sequencer_by_nt.

## $miss_indexes_by_strength

## Normalized table: delete_sequencer_by_nt.

## $miss_sequencer_by_strength

## Normalized table: delete_sequencer_by_nt.

## $insert_reads_by_position

## Normalized table: delete_sequencer_by_nt.

## $insert_indexes_by_position

## Normalized table: delete_sequencer_by_nt.

## $insert_sequencer_by_position

## Normalized table: delete_sequencer_by_nt.

## $insert_reads_by_nt

## Normalized table: delete_sequencer_by_nt.

## $insert_indexes_by_nt

## Normalized table: delete_sequencer_by_nt.

## $insert_sequencer_by_nt

## Normalized table: delete_sequencer_by_nt.

## $delete_reads_by_position

## Normalized table: delete_sequencer_by_nt.

## $delete_indexes_by_position

## Normalized table: delete_sequencer_by_nt.

## $delete_sequencer_by_position

## Normalized table: delete_sequencer_by_nt.

## $delete_reads_by_nt

## Normalized table: delete_sequencer_by_nt.

## $delete_indexes_by_nt

## Normalized table: delete_sequencer_by_nt.

## $delete_sequencer_by_nt

pander::pander(sessionInfo())
message(paste0("This is hpgltools commit: ", get_git_commit()))
this_save <- paste0(gsub(pattern="\\.Rmd", replace="", x=rmd_file), "-v", ver, ".rda.xz")
message(paste0("Saving to ", this_save))
tmp <- sm(saveme(filename=this_save))

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Playing with mismatch data.

atb abelew@gmail.com

2019-12-20

1 Messing around

2 Print raw tables

3 Print raw plots

4 Print normalized tables

5 Print normalized plots