Preprocessing some new samples!

1 Introduction

Carrie and Dr. Taneyhill have some new data. I know nothing about it! So I am excited to read some reviews and learn the experimental design. In the mean time, I am going to submit some jobs on the cluster to get a feeling for the data.

cd preprocessing
module add cyoa/202302
start=$(pwd)
for sample in A* B* C*; do
    echo "Starting $sample."
    cd $sample
    cyoa --method prnaseq --species mm39_109 \
         --input $(/bin/ls | tr '\n' ':' | sed 's/:$//g') \
         --gff_tag gene
    cd $start
done