These documents are a series of Leishmania major/amazonensis RNASeq analyses.

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library('pander')
pander(sessionInfo())

R version 3.3.1 (2016-06-21)

**Platform:** x86_64-pc-linux-gnu (64-bit)

locale: LC_CTYPE=en_US.UTF-8, LC_NUMERIC=C, LC_TIME=en_US.UTF-8, LC_COLLATE=en_US.UTF-8, LC_MONETARY=en_US.UTF-8, LC_MESSAGES=en_US.UTF-8, LC_PAPER=en_US.UTF-8, LC_NAME=en_US.UTF-8, LC_ADDRESS=en_US.UTF-8, LC_TELEPHONE=en_US.UTF-8, LC_MEASUREMENT=en_US.UTF-8 and LC_IDENTIFICATION=en_US.UTF-8

attached base packages: splines, parallel, stats4, stats, graphics, grDevices, utils, datasets, methods and base

other attached packages: pander(v.0.6.0), hpgltools(v.2016.02), Vennerable(v.3.1.0.9000), TxDb.Tbrucei.TREU927.TriTrypDB27(v.27.0), org.Tbrucei.TREU927.eg.db(v.27.0), TxDb.Tcruzi.CLBrenerEsmeraldo.TriTrypDB27(v.27.0), org.Tcruzi.CLBrenerEsmeraldo.eg.db(v.27.0), Trypanosoma.cruzi.CLBrener.Esmeraldo(v.27.0), Trypanosoma.brucei.treu927(v.27.0), venneuler(v.1.1-0), rJava(v.0.9-8), BiocInstaller(v.1.23.9), sqldf(v.0.4-10), RSQLite(v.1.0.0), DBI(v.0.5-1), gsubfn(v.0.6-6), proto(v.0.3-10), RColorBrewer(v.1.1-2), DESeq2(v.1.13.14), SummarizedExperiment(v.1.3.82), hwriter(v.1.3.2), ReportingTools(v.2.13.2), knitr(v.1.14), siggenes(v.1.47.0), multtest(v.2.29.0), matrixStats(v.0.50.2), gplots(v.3.0.1), cbcbSEQ(v.0.9.1), sva(v.3.21.0), genefilter(v.1.55.2), mgcv(v.1.8-15), nlme(v.3.1-128), preprocessCore(v.1.35.0), corpcor(v.1.6.8), limma(v.3.29.21), TxDb.Lmajor.friedlin.TriTrypDB27(v.27.0), org.Lmajor.friedlin.eg.db(v.27.0), Leishmania.mexicana.MHOMGT2001U1103(v.27.0), TxDb.lmexicana.MHOMGT2001U1103.TriTrypDB27(v.27.0), org.Lmexicana.MHOMGT2001U1103.eg.db(v.27.0), Leishmania.major.Friedlin(v.27.0), GO.db(v.3.3.0), OrganismDbi(v.1.15.1), GenomicFeatures(v.1.25.16), GenomicRanges(v.1.25.94), GenomeInfoDb(v.1.9.13), AnnotationDbi(v.1.35.4), IRanges(v.2.7.15), S4Vectors(v.0.11.17), Biobase(v.2.33.3) and BiocGenerics(v.0.19.2)

loaded via a namespace (and not attached): GOstats(v.2.39.1), Hmisc(v.3.17-4), AnnotationHub(v.2.5.12), plyr(v.1.8.4), GSEABase(v.1.35.4), BiocParallel(v.1.7.8), ggplot2(v.2.1.0), digest(v.0.6.10), foreach(v.1.4.3), ensembldb(v.1.5.14), htmltools(v.0.3.5), gdata(v.2.17.0), magrittr(v.1.5), memoise(v.1.0.0), BSgenome(v.1.41.2), cluster(v.2.0.4), openxlsx(v.3.1.22), Biostrings(v.2.41.4), readr(v.1.0.0), annotate(v.1.51.1), R.utils(v.2.4.0), ggbio(v.1.21.6), colorspace(v.1.2-6), ggrepel(v.0.5), tcltk(v.3.3.1), crayon(v.1.3.2), RCurl(v.1.95-4.8), graph(v.1.51.0), roxygen2(v.5.0.1), survival(v.2.39-5), VariantAnnotation(v.1.19.10), iterators(v.1.0.8), gtable(v.0.2.0), zlibbioc(v.1.19.0), XVector(v.0.13.7), XLConnect(v.0.2-12), scales(v.0.4.0), GGally(v.1.2.0), edgeR(v.3.15.2), Rcpp(v.0.12.7), xtable(v.1.8-2), foreign(v.0.8-67), Formula(v.1.2-1), AnnotationForge(v.1.15.11), httr(v.1.2.1), acepack(v.1.3-3.3), R.methodsS3(v.1.7.1), reshape(v.0.8.5), XML(v.3.98-1.4), nnet(v.7.3-12), locfit(v.1.5-9.1), labeling(v.0.3), reshape2(v.1.4.1), munsell(v.0.4.3), tools(v.3.3.1), devtools(v.1.12.0), evaluate(v.0.9), stringr(v.1.1.0), yaml(v.2.1.13), caTools(v.1.17.1), KEGGREST(v.1.13.2), RBGL(v.1.49.3), mime(v.0.5), formatR(v.1.4), XLConnectJars(v.0.2-12), R.oo(v.1.20.0), biomaRt(v.2.29.2), compiler(v.3.3.1), curl(v.2.1), png(v.0.1-7), interactiveDisplayBase(v.1.11.3), testthat(v.1.0.2), PFAM.db(v.3.3.0), tibble(v.1.2), geneplotter(v.1.51.0), stringi(v.1.1.1), highr(v.0.6), lattice(v.0.20-34), Matrix(v.1.2-7.1), data.table(v.1.9.6), bitops(v.1.0-6), httpuv(v.1.3.3), rtracklayer(v.1.33.12), R6(v.2.1.3), latticeExtra(v.0.6-28), KernSmooth(v.2.23-15), gridExtra(v.2.2.1), codetools(v.0.2-14), dichromat(v.2.0-0), MASS(v.7.3-45), gtools(v.3.5.0), assertthat(v.0.1), chron(v.2.3-47), Category(v.2.39.0), withr(v.1.0.2), GenomicAlignments(v.1.9.6), Rsamtools(v.1.25.2), grid(v.3.3.1), rpart(v.4.1-10), rmarkdown(v.1.0), git2r(v.0.15.0), biovizBase(v.1.21.0), base64enc(v.0.1-3) and shiny(v.0.14)

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