These documents are a series of S.pyogenes TNSeq and RNASeq analyses.
In my more recent analyses I split the tasks into a few pages:
pander::pander(sessionInfo())
R version 3.3.1 (2016-06-21)
**Platform:** x86_64-pc-linux-gnu (64-bit)
locale: LC_CTYPE=en_US.UTF-8, LC_NUMERIC=C, LC_TIME=en_US.UTF-8, LC_COLLATE=en_US.UTF-8, LC_MONETARY=en_US.UTF-8, LC_MESSAGES=en_US.UTF-8, LC_PAPER=en_US.UTF-8, LC_NAME=C, LC_ADDRESS=C, LC_TELEPHONE=C, LC_MEASUREMENT=en_US.UTF-8 and LC_IDENTIFICATION=C
attached base packages: stats, graphics, grDevices, utils, datasets, methods and base
other attached packages: hpgltools(v.2016.02)
loaded via a namespace (and not attached): Rcpp(v.0.12.7), digest(v.0.6.10), grid(v.3.3.1), plyr(v.1.8.4), gtable(v.0.2.0), formatR(v.1.2.1), magrittr(v.1.5), evaluate(v.0.9), scales(v.0.4.0), ggplot2(v.2.1.0), stringi(v.1.1.1), rmarkdown(v.1.0), tools(v.3.3.1), pander(v.0.6.0), stringr(v.1.1.0), munsell(v.0.4.3), yaml(v.2.1.13), colorspace(v.1.2-6), htmltools(v.0.3.5) and knitr(v.1.14)